Hg_chrom9_TN10mRNA_17337
Organism: Heterodera glycines Gene Locus: chr9:3795152-3798647 Feature type: polypeptideProtein Sequence
Length: 298
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.015 | 0.468 | 0.854 | 0.347 | 1.007 | 1.377 | 0.959 | 0.671 | 0.298 | 1.496 | 0.661 | 1.579 | 1.305 | 1.355 | 0.685 | 1.534 | 0.825 | 1.068 | 1.291 | 1.086 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16378
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.186
|
0.118
|
0.030
|
0.253
|
0.641
|
0.619
|
0.622
|
0.023
|
0.222
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012821
|
1.000
|
1.000
|
Hsc_gene_18730.t1
|
Hsc_gene_18730.t1
|
— |
Q9UI14.1 Prenylated Rab acceptor protein 1 [Homo sapiens]
|
KAI1712599.1 PRA1 family protein [Ditylenchus destructor]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.962|GO:0110165_0.961|GO:0016020_0.767|GO:0003674_0.617|GO:0071944_0.573|GO:0005488_0.565|GO:0005886_0.563|GO:0005515_0.554
|
IPR004895+136-287_153-286+
|
— |
PF03208+153-286+PRA1_family_protein
|
— |
PTHR19317+136-287+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-142
|
1.000
|
143-298
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.691
|
32438.690
|
4.752
|
-7.000
|
19.799
|
11.409
|
42.953
|
57.047
|
9.060
|
10.738
|
54.362
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
midnightblue
|
2141.069
|
1766.771
|
2002.375
|
1602.273
|
1686.492
|
4088.272
|
2743.626
|
3082.462
|
945.685
|
2293.310
|
1715.757
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.278
|
-0.213
|
— |
1.293
|
-0.566
|
-0.507
|
— | — | — | — | — | — |
No JSON data available for plots.