Hg_chrom9_TN10mRNA_17342
Organism: Heterodera glycines Gene Locus: chr9:3812213-3814335 Feature type: polypeptideProtein Sequence
Length: 419
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.888 | 1.11 | 0.781 | 0.741 | 1.233 | 1.04 | 0.767 | 0.835 | 0.955 | 1.161 | 1.049 | 0.842 | 1.856 | 1.01 | 1.461 | 1.159 | 0.704 | 0.976 | 0.734 | 0.421 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16382
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.834
|
0.316
|
0.037
|
0.401
|
0.032
|
0.064
|
0.106
|
0.032
|
0.019
|
0.128
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012823
|
1.000
|
1.000
|
Hsc_gene_18726.t1
|
Hsc_gene_18726.t1
|
— |
Q9JLV6.2 Bifunctional polynucleotide phosphatase/kinase [Mus musculus]
|
KAH7725555.1 Protein F21D5.5 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.790|GO:0008150_0.707|GO:0009987_0.656|GO:0005575_0.652|GO:0110165_0.649|GO:0005622_0.590|GO:0005488_0.572|GO:0008152_0.567|GO:0050896_0.542|GO:0043226_0.541|GO:0044238_0.541|GO:0043170_0.525|GO:0051716_0.520|GO:0043229_0.519
|
IPR006549+58-184+|IPR006551+45-218+|IPR013954+58-218+|IPR023214+37-228+|IPR027417+230-416_258-396+|IPR036412+38-220+
|
— |
PF08645+58-218+Polynucleotide_kinase_3_phosphatase|PF13671+260-382+AAA_domain
|
G3DSA:3.40.50.1000:FF:000078+36-228+Bifunctional_polynucleotide_phosphatase/kinase|G3DSA:3.40.50.300:FF:000737+230-417+Bifunctional_polynucleotide_phosphatase/kinase
|
PTHR12083+34-402+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-12
|
1.000
|
13-419
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.877
|
46994.640
|
9.223
|
13.500
|
27.446
|
10.740
|
48.687
|
51.313
|
15.752
|
11.695
|
49.403
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey60
|
817.545
|
825.015
|
948.626
|
836.320
|
888.001
|
674.794
|
1341.974
|
807.831
|
801.122
|
604.957
|
689.027
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.117
|
— | — |
-0.382
|
1.004
|
— |
0.877
|
— | — | — | — | — |
No JSON data available for plots.