Hg_chrom9_TN10mRNA_17343
Organism: Heterodera glycines Gene Locus: chr9:3815191-3816313 Feature type: polypeptideProtein Sequence
Length: 355
(Signal peptide: 1-32)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.114 | 0.131 | 0.461 | 0.097 | 4.178 | 0.939 | 0.805 | 0.423 | 0.25 | 0.343 | 3.03 | 0.497 | 0.391 | 0.054 | 2.817 | 0.684 | 0.739 | 0.213 | 0.0 | 0.0 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16383
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_18724
|
— |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus|extracellular
|
nucleus
|
KKDTKKEESGGEKMEAEEKKEEKREDKEAEKKPEEKKEEAVAAASGEKSEAKEETKKEAEEKKEKRETEEKKEEETKKEAEEKKEGEQKKEGEEKKEKRETEEKKEEETKKEAEEKKGEEKKEEKTEEVKKEAEEKKEKRETEEKKEEEQKKDNKREADQEKKTEEKKEEKAEASKEVEEKKEAEKKEKRETEERRRRKQRHRARKRRRRRRRRRKRRSGQRRRKHQRKEQRKRRRTRHRRRRRRREEGG
|
— | — | — | — |
1-32
|
0.652
|
0.936
|
0.000
|
0.000
|
0.781
|
0.064
|
0.072
|
0.334
|
0.074
|
0.009
|
0.060
|
0.006
|
0.086
|
0.624
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012824
|
1.000
|
1.000
|
Hsc_gene_18724.t1
|
Hsc_gene_18724.t1;Hsc_gene_18724.t2
|
— | — | — |
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-355
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.677
|
41784.360
|
10.383
|
23.500
|
62.254
|
2.254
|
75.775
|
24.225
|
34.648
|
27.606
|
30.704
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
87159.423
|
9579.674
|
3929.379
|
24845.019
|
140468.373
|
565179.121
|
8240.745
|
57650.153
|
426.660
|
77292.805
|
44350.172
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.516
|
1.238
|
2.770
|
2.467
|
2.024
|
-6.089
|
-3.409
|
-2.658
|
-7.636
|
6.041
|
— | — | — |