SCN Proteipedia

Hg_chrom9_TN10mRNA_17344

Organism: Heterodera glycines Gene Locus: chr9:3818565-3831131 Feature type: polypeptide

Protein Sequence

Length: 1,390

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.795	0.837	0.733	0.595	1.331	1.015	0.968	1.259	0.863	1.244	0.48	1.397	1.379	1.273	1.821	1.274	0.543	0.981	1.439	0.444	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16384	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	18-ppJ2_pJ2_J3_J4_Male	0.975

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide	cell_membrane	—	KRRR,GKGRWSRREKAKGRQIGSK	4-30	0.996	35-55	1.000	—	—	0.006	—	—	0.166	0.136	0.044	0.254	0.172	0.161	0.366	0.139	0.678	0.379

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004942	1.000	2.000	Hsc_gene_18723.t1;Hsc_gene_18723.t2	Hsc_gene_18722.t1;Hsc_gene_18723.t1;Hsc_gene_18723.t2	—	H2KZ60.1 Contactin rig-6 [Caenorhabditis elegans]	KAI1714407.1 immunoglobulin domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.860\|GO:0005575_0.815\|GO:0009987_0.808\|GO:0110165_0.806\|GO:0016020_0.679\|GO:0071944_0.571\|GO:0032501_0.540\|GO:0005886_0.531\|GO:0032502_0.531\|GO:0048856_0.531\|GO:0071840_0.529\|GO:0016043_0.520\|GO:0007275_0.505	IPR003598+251-318_473-538_564-638_667-738+\|IPR003599+467-549_558-649_661-749+\|IPR003961+858-968_984-1079_985-1089_1095-1199_1216-1326_1248-1339_1262-1335+\|IPR007110+238-327_329-425_458-547_551-647_653-747+\|IPR013098+473-548_553-648_660-747+\|IPR013783+234-328_350-430_457-549_550-650_651-752_975-1085_1086-1216_1257-1347+\|IPR016186+57-179+\|IPR036116+975-1198_1100-1335+\|IPR036179+247-415_473-554_551-653_651-748+	SM00060+858-968_984-1079_1095-1199_1216-1326+\|SM00408+251-318_473-538_564-638_667-738+\|SM00409+467-549_558-649_661-749+	PF07679+473-548_553-648_660-747+Immunoglobulin_I-set_domain	—	PTHR44170+231-1333+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1201-1261	2.000	1-1200;1262-1390	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.839	155681.700	7.624	18.500	26.619	10.863	46.403	53.597	14.604	12.014	49.640

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	grey	4394.673	2097.752	7700.309	2405.487	2375.975	6256.521	1991.135	9116.184	1912.078	5813.876	4141.677

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.647	—	-1.570	—	1.412	-1.644	0.440	-2.055	-1.721	—	—	—	—

No JSON data available for plots.

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