Hg_chrom9_TN10mRNA_17345
Organism: Heterodera glycines Gene Locus: chr9:3833923-3836254 Feature type: polypeptideProtein Sequence
Length: 507
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.193 | 0.872 | 0.717 | 0.612 | 0.526 | 0.607 | 1.268 | 1.183 | 1.578 | 1.626 | 0.418 | 1.508 | 1.753 | 0.645 | 0.845 | 1.014 | 0.776 | 1.016 | 2.276 | 0.58 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16385
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.795
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
12-33
|
0.995
|
— | — | — | — |
0.000
|
— | — |
0.058
|
0.219
|
0.051
|
0.247
|
0.331
|
0.292
|
0.286
|
0.014
|
0.661
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012825
|
1.000
|
1.000
|
Hsc_gene_18721.t1
|
Hsc_gene_18721.t1
|
— |
P54145.1 Putative ammonium transporter 1 [Caenorhabditis elegans]
|
KAH7730633.1 Protein AMT-4 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008519|GO:0016020|GO:0072488
|
GO:0008150_0.947|GO:0009987_0.810|GO:0006810_0.780|GO:0051179_0.780|GO:0051234_0.780|GO:0055085_0.719|GO:0071705_0.697|GO:0005575_0.669|GO:0110165_0.668|GO:0098660_0.648|GO:0098662_0.637|GO:0071944_0.624|GO:0016020_0.618|GO:0072488_0.602|GO:0005886_0.595|GO:0003674_0.529
|
IPR001905+39-456+|IPR024041+41-456+|IPR029020+27-469+
|
— |
PF00909+41-456+Ammonium_Transporter_Family
|
G3DSA:1.10.3430.10:FF:000010+22-463+Ammonium_transporter
|
PTHR11730+36-458+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
494-507
|
1.000
|
1-493
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.764
|
54915.800
|
7.245
|
5.000
|
16.371
|
13.609
|
34.320
|
65.680
|
9.270
|
7.101
|
52.268
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightgreen
|
1133.683
|
110.580
|
1773.652
|
959.116
|
1749.248
|
3292.367
|
1309.039
|
1651.978
|
59.808
|
847.765
|
510.069
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.775
|
2.980
|
-0.778
|
0.835
|
0.927
|
-1.320
|
-1.102
|
— |
-3.953
|
4.201
|
— | — | — |
No JSON data available for plots.