Hg_chrom9_TN10mRNA_17346
Organism: Heterodera glycines Gene Locus: chr9:3836508-3838557 Feature type: polypeptideProtein Sequence
Length: 393
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.006 | 0.592 | 0.648 | 0.79 | 0.679 | 1.37 | 0.666 | 0.763 | 1.244 | 1.513 | 0.54 | 1.347 | 1.272 | 1.125 | 1.298 | 1.381 | 1.043 | 1.002 | 0.391 | 1.123 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16386
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.855
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane
|
mitochondria
|
RRRR
|
12-93
|
0.708
|
— | — | — |
0.652
|
0.427
|
5.000
|
— |
0.066
|
0.185
|
0.215
|
0.194
|
0.262
|
0.330
|
0.193
|
0.006
|
0.714
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004943
|
2.000
|
1.000
|
Hsc_gene_18720.t1
|
Hsc_gene_18720.t1
|
— |
O17185.2 Two pore potassium channel protein sup-9 [Caenorhabditis elegans]
|
KAI1728200.1 ion channel domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005267|GO:0016020|GO:0071805
|
GO:0008150_0.966|GO:0051179_0.878|GO:0006810_0.868|GO:0051234_0.868|GO:0009987_0.866|GO:0003674_0.792|GO:0005575_0.766|GO:0110165_0.764|GO:0006811_0.757|GO:0016020_0.732|GO:0055085_0.724|GO:0071944_0.719|GO:0006812_0.711|GO:0030001_0.711|GO:0005886_0.707|GO:0034220_0.689|GO:0006813_0.673|GO:0005215_0.665|GO:0022857_0.665|GO:0098660_0.662|GO:0005216_0.653|GO:0015075_0.653|GO:0015267_0.653|GO:0022803_0.653|GO:0098655_0.652|GO:0098662_0.643|GO:0015318_0.632|GO:0008324_0.629|GO:0005261_0.624|GO:0071805_0.619|GO:0022890_0.617|GO:0046873_0.613|GO:0005267_0.598|GO:0015079_0.598|GO:0065007_0.524
|
IPR003092+1-391_11-33_113-129_213-227+|IPR003280+9-300_80-108_188-197+|IPR013099+73-123_161-233+
|
— |
PF07885+73-123_161-233+Ion_channel
|
G3DSA:1.10.287.70:FF:000090+1-262+two_pore_potassium_channel_protein_sup-9
|
PTHR11003+9-300+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
271-393
|
1.000
|
1-270
|
9g9x_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.854
|
43415.160
|
8.982
|
12.000
|
19.084
|
10.433
|
43.003
|
56.997
|
11.450
|
7.634
|
51.145
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
brown
|
217.728
|
181.233
|
220.020
|
166.566
|
121.316
|
238.184
|
314.877
|
485.495
|
20.291
|
289.459
|
174.101
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.259
|
-0.293
|
-0.490
|
0.989
|
0.411
|
0.929
|
-0.486
|
— | — | — | — | — |