Hg_chrom9_TN10mRNA_17347
Organism: Heterodera glycines Gene Locus: chr9:3836508-3838574 Feature type: polypeptideProtein Sequence
Length: 402
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.012 | 0.579 | 0.633 | 0.772 | 0.663 | 1.403 | 0.711 | 0.871 | 1.216 | 1.479 | 0.565 | 1.317 | 1.313 | 1.1 | 1.269 | 1.386 | 1.019 | 0.98 | 0.574 | 1.097 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16386
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.855
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane
|
mitochondria
|
RRRR
|
11-102
|
0.766
|
— | — | — |
0.652
|
0.427
|
5.000
|
— |
0.069
|
0.200
|
0.178
|
0.120
|
0.283
|
0.465
|
0.215
|
0.005
|
0.784
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004943
|
2.000
|
1.000
|
Hsc_gene_18720.t1
|
Hsc_gene_18720.t1
|
— |
O17185.2 Two pore potassium channel protein sup-9 [Caenorhabditis elegans]
|
KAI1728200.1 ion channel domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005267|GO:0016020|GO:0071805
|
GO:0008150_0.966|GO:0051179_0.875|GO:0006810_0.867|GO:0051234_0.867|GO:0009987_0.866|GO:0003674_0.797|GO:0005575_0.771|GO:0110165_0.770|GO:0006811_0.754|GO:0016020_0.737|GO:0055085_0.725|GO:0071944_0.715|GO:0006812_0.712|GO:0030001_0.712|GO:0005886_0.702|GO:0034220_0.687|GO:0006813_0.673|GO:0005215_0.668|GO:0022857_0.668|GO:0098660_0.661|GO:0005216_0.653|GO:0015075_0.653|GO:0015267_0.653|GO:0022803_0.653|GO:0098655_0.652|GO:0098662_0.644|GO:0015318_0.633|GO:0008324_0.629|GO:0005261_0.624|GO:0071805_0.619|GO:0022890_0.617|GO:0046873_0.614|GO:0005267_0.598|GO:0015079_0.598|GO:0065007_0.510
|
IPR003092+1-400_11-33_122-138_222-236+|IPR003280+9-309_89-117_197-206+|IPR013099+65-132_170-242+
|
— |
PF07885+65-132_170-242+Ion_channel
|
G3DSA:1.10.287.70:FF:000090+1-271+two_pore_potassium_channel_protein_sup-9
|
PTHR11003+9-309+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
280-402
|
1.000
|
1-279
|
9g9x_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.866
|
44414.250
|
9.126
|
13.500
|
19.154
|
10.945
|
43.035
|
56.965
|
11.692
|
7.463
|
50.995
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
brown
|
217.728
|
181.233
|
220.020
|
166.566
|
121.316
|
238.184
|
314.877
|
485.495
|
20.291
|
289.459
|
174.101
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.259
|
-0.293
|
-0.490
|
0.989
|
0.411
|
0.929
|
-0.486
|
— | — | — | — | — |