Hg_chrom9_TN10mRNA_17348
Organism: Heterodera glycines Gene Locus: chr9:3838742-3842163 Feature type: polypeptideProtein Sequence
Length: 649
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.609 | 1.29 | 0.812 | 0.797 | 0.847 | 1.146 | 0.605 | 1.079 | 1.267 | 1.145 | 0.584 | 2.085 | 1.584 | 1.274 | 1.541 | 1.387 | 0.884 | 0.817 | 1.185 | 0.634 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16387
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.965
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane
|
nucleus
|
FKRR,RRRK,RRPKRRS,KKLLFPCQNGSVSKRISR,RRQMSNSSNCGMFPIARRR
|
— | — | — | — |
1-25
|
0.956
|
1.000
|
3.000
|
3.000
|
0.070
|
0.110
|
0.029
|
0.131
|
0.205
|
0.213
|
0.222
|
0.024
|
0.821
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012826
|
1.000
|
1.000
|
Hsc_gene_18719.t1
|
Hsc_gene_18719.t1
|
— |
Q9GQ00.1 Serotonin-gated chloride channel mod-1 [Caenorhabditis elegans]
|
WRV86329.1 mod-1 [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0005216|GO:0005230|GO:0006811|GO:0016020|GO:0034220
|
GO:0008150_0.974|GO:0009987_0.942|GO:0005575_0.889|GO:0110165_0.889|GO:0065007_0.834|GO:0016020_0.825|GO:0050789_0.811|GO:0071944_0.803|GO:0051179_0.794|GO:0005886_0.792|GO:0006810_0.792|GO:0051234_0.792|GO:0003674_0.755|GO:0007154_0.747|GO:0023052_0.740|GO:0006811_0.689|GO:0055085_0.685|GO:0050794_0.671|GO:0034220_0.655|GO:0050896_0.618|GO:0032501_0.587|GO:0005215_0.585|GO:0022857_0.585|GO:0005216_0.583|GO:0015075_0.583|GO:0015267_0.583|GO:0022803_0.583|GO:0007267_0.581|GO:0051716_0.579|GO:0060089_0.563|GO:0030054_0.562|GO:0038023_0.561|GO:0022836_0.548|GO:0015276_0.523|GO:0022834_0.523|GO:0045202_0.522|GO:0007268_0.517|GO:0098916_0.517|GO:0099536_0.517|GO:0099537_0.517|GO:0007165_0.510
|
IPR006028+248-268_274-295_308-329_601-621+|IPR006029+253-341+|IPR006201+46-465_83-99_119-130_165-179_239-251+|IPR006202+36-244+|IPR018000+165-179+|IPR036719+245-624+|IPR036734+31-241_35-244+|IPR038050+242-396_534-631+
|
— |
PF02931+36-244+Neurotransmitter-gated_ion-channel_ligand_binding_domain|PF02932+253-341+Neurotransmitter-gated_ion-channel_transmembrane_region
|
G3DSA:2.70.170.10:FF:000035+31-241+Ligand-Gated_ion_Channel
|
PTHR18945+46-465+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
404-588;644-649
|
2.000
|
1-403;589-643
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.901
|
73754.400
|
8.820
|
19.000
|
23.112
|
11.556
|
48.228
|
51.772
|
13.559
|
9.553
|
49.769
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
387.195
|
490.772
|
1100.199
|
385.881
|
141.632
|
124.797
|
339.070
|
811.316
|
427.832
|
100.480
|
240.773
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.935
|
-0.484
|
-1.402
|
-1.476
|
— |
1.453
|
2.599
|
-1.117
|
— | — | — | — | — |