Hg_chrom9_TN10mRNA_17349
Organism: Heterodera glycines Gene Locus: chr9:3844282-3844936 Feature type: polypeptideProtein Sequence
Length: 95
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.49 | 1.224 | 0.383 | 0.0 | 1.404 | 1.35 | 0.501 | 2.632 | 0.702 | 0.711 | 1.116 | 2.477 | 0.585 | 1.215 | 1.504 | 1.053 | 0.69 | 1.276 | 2.429 | 1.858 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16388
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.660
|
0.348
|
0.026
|
0.664
|
0.155
|
0.089
|
0.129
|
0.043
|
0.081
|
0.074
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012827
|
1.000
|
1.000
|
Hsc_gene_18718.t1
|
Hsc_gene_18718.t1
|
— |
A8XMF2.1 Cyclin-dependent kinases regulatory subunit [Caenorhabditis briggsae]
|
KAI1731425.1 cyclin-dependent kinase regulatory subunit domain-containing protein [Ditylenchus destructor]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016538
|
GO:0005575_0.720|GO:0110165_0.715|GO:0008150_0.706|GO:0009987_0.646|GO:0005622_0.623|GO:0016020_0.599|GO:0043226_0.583|GO:0065007_0.575|GO:0043229_0.573|GO:0050789_0.561|GO:0050794_0.534|GO:0043227_0.531|GO:0043231_0.524|GO:0071840_0.513|GO:0016043_0.512
|
IPR000789+4-18_4-73_5-72_7-25_19-33_41-55_56-70+|IPR036858+1-76_3-73+
|
SM01084+4-73+
|
PF01111+5-72+Cyclin-dependent_kinase_regulatory_subunit
|
G3DSA:3.30.170.10:FF:000001+1-77+Cyclin-dependent_kinases_regulatory_subunit
|
PTHR23415+2-86+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
74-95
|
1.000
|
1-73
|
8byl_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.820
|
11332.870
|
9.876
|
6.500
|
30.526
|
16.842
|
52.632
|
47.368
|
20.000
|
10.526
|
42.105
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1307.648
|
772.062
|
518.405
|
890.760
|
1544.497
|
1744.936
|
1771.940
|
1567.909
|
1124.767
|
1573.443
|
1381.153
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.804
|
— |
0.890
|
0.762
|
0.191
|
— |
-0.262
|
0.321
|
— | — | — | — | — |
No JSON data available for plots.