SCN Proteipedia

Hg_chrom9_TN10mRNA_17351

Organism: Heterodera glycines Gene Locus: chr9:3849590-3854939 Feature type: polypeptide

Protein Sequence

Length: 791

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.779	1.529	0.805	0.305	0.737	1.491	0.798	1.391	1.124	0.871	0.613	1.413	1.018	1.459	1.187	1.589	1.181	0.824	0.292	0.744	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16390	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	RRRRQ	—	—	—	—	—	—	0.000	—	—	0.476	0.224	0.021	0.514	0.134	0.072	0.060	0.021	0.419	0.030

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004944	1.000	2.000	Hsc_gene_18713.t1;Hsc_gene_18713.t2	Hsc_gene_18713.t1;Hsc_gene_18713.t2	—	B1WAP7.1 Segment polarity protein dishevelled homolog DVL-3 [Xenopus tropicalis]	KAH7713541.1 Protein DSH-1 a [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0016055\|GO:0035556	GO:0008150_0.937\|GO:0005575_0.912\|GO:0110165_0.905\|GO:0009987_0.884\|GO:0005622_0.824\|GO:0016020_0.762\|GO:0065007_0.753\|GO:0003674_0.747\|GO:0050789_0.739\|GO:0043226_0.716\|GO:0050794_0.713\|GO:0005488_0.686\|GO:0050896_0.672\|GO:0071840_0.653\|GO:0016043_0.646\|GO:0051716_0.644\|GO:0043229_0.625\|GO:0005515_0.623\|GO:0051179_0.623\|GO:0007154_0.603\|GO:0023052_0.603\|GO:0048518_0.592\|GO:0005737_0.588\|GO:0032502_0.587\|GO:0048856_0.587\|GO:0032501_0.578\|GO:0071944_0.575\|GO:0048522_0.574\|GO:0007165_0.565\|GO:0005886_0.562\|GO:0043227_0.542\|GO:0007275_0.537\|GO:0048731_0.529\|GO:0051641_0.520	IPR000591+495-569_498-567+\|IPR001158+61-143_61-144_64-139+\|IPR001478+273-360_275-348_275-359_284-363+\|IPR015506+53-155+\|IPR029071+62-128+\|IPR036034+249-364_269-372+\|IPR036388+471-569+\|IPR036390+481-572+\|IPR038207+60-143+	SM00021+61-144+\|SM00049+495-569+\|SM00228+284-363+	PF00595+275-359+PDZ_domain\|PF00610+498-567+Domain_found_in_Dishevelled,_Egl-10,_and_Pleckstrin_(DEP)\|PF00778+64-139+DIX_domain	G3DSA:1.10.10.10:FF:000400+471-569+DiSHevelled_related\|G3DSA:2.30.42.10:FF:000203+269-370+DiSHevelled_related\|G3DSA:2.40.240.130:FF:000001+60-143+Segment_polarity_protein_dishevelled_homolog_DVL-1	PTHR10878+53-155+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-65;202-270;373-473;587-791	3.000	66-201;271-372;474-586	8wma_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.949	86604.790	8.973	19.000	21.492	9.355	52.212	47.788	12.642	8.850	56.637

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	midnightblue	838.247	1202.566	1058.072	885.992	845.747	801.910	1145.534	905.613	745.761	540.974	628.740

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.415	-0.578	-0.147	—	—	0.524	—	0.481	—	—	—	—	—

No JSON data available for plots.

Back to Browser