Hg_chrom9_TN10mRNA_17352
Organism: Heterodera glycines Gene Locus: chr9:3855586-3858165 Feature type: polypeptideProtein Sequence
Length: 346
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.344 | 0.874 | 0.578 | 0.399 | 0.915 | 2.223 | 0.723 | 1.301 | 1.156 | 0.82 | 0.876 | 2.38 | 1.044 | 1.223 | 1.003 | 0.867 | 0.711 | 1.095 | 0.0 | 1.105 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16391
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKLRTYEKEDLERAKRY
|
— | — | — | — | — | — |
0.000
|
— | — |
0.583
|
0.075
|
0.009
|
0.383
|
0.065
|
0.036
|
0.116
|
0.008
|
0.187
|
0.084
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012829
|
1.000
|
1.000
|
Hsc_gene_18712.t1
|
Hsc_gene_18712.t1;Hsc_gene_18712.t2;Hsc_gene_18712.t3;Hsc_gene_18712.t4;Hsc_gene_18712.t5;Hsc_gene_18712.t6
|
— |
Q9N3S4.1 Poly(U)-binding-splicing factor rnp-6 [Caenorhabditis elegans]
|
KAI1724439.1 RNA recognition motif domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0005575_0.879|GO:0110165_0.872|GO:0005622_0.740|GO:0016020_0.710|GO:0008150_0.655|GO:0043226_0.649|GO:0003674_0.618|GO:0043227_0.598|GO:0043229_0.593|GO:0005488_0.554|GO:0009987_0.553|GO:0043231_0.517
|
IPR000504+124-202_125-198_126-196_224-301_225-297_226-294+|IPR012677+97-220_221-305+|IPR035979+114-209_222-305+|IPR051974+44-341+
|
SM00360+125-198_225-297+
|
PF00076+126-196_226-294+RNA_recognition_motif
|
— |
PTHR47330+44-341+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-346
|
7q8a_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.809
|
38215.790
|
9.328
|
11.500
|
21.965
|
10.116
|
44.798
|
55.202
|
13.295
|
8.671
|
49.711
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1338.904
|
2069.858
|
1319.309
|
1336.363
|
1296.781
|
1268.304
|
1136.266
|
1370.742
|
1145.692
|
1324.329
|
1247.770
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.879
|
-0.768
|
0.127
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.