Hg_chrom9_TN10mRNA_17353
Organism: Heterodera glycines Gene Locus: chr9:3858313-3861288 Feature type: polypeptideProtein Sequence
Length: 532
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.678 | 0.962 | 0.923 | 0.389 | 0.971 | 1.446 | 0.448 | 2.162 | 1.086 | 1.295 | 0.57 | 1.659 | 1.305 | 1.301 | 1.343 | 1.289 | 0.74 | 0.968 | 1.591 | 0.94 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16392
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.751
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.366
|
0.241
|
0.008
|
0.624
|
0.155
|
0.421
|
0.356
|
0.143
|
0.211
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012830
|
1.000
|
1.000
|
Hsc_gene_18711.t1
|
Hsc_gene_18711.t1
|
— |
Q9NU19.3 TBC1 domain family member 22B [Homo sapiens]
|
KAI1701842.1 rab-GTPase-TBC domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.683|GO:0110165_0.683|GO:0003674_0.659|GO:0005622_0.622|GO:0005488_0.589|GO:0016020_0.584|GO:0005515_0.546|GO:0008150_0.535|GO:0005737_0.529|GO:0043226_0.512
|
IPR000195+232-487_235-461_239-484+|IPR035969+221-421_397-519+
|
SM00164+232-487+
|
PF00566+239-484+Rab-GTPase-TBC_domain
|
G3DSA:1.10.472.80:FF:000001+396-532+TBC1_domain_family_member_22B|G3DSA:1.10.8.270:FF:000004+266-395+TBC1_domain_family,_member_22B
|
PTHR22957+186-498+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-193
|
1.000
|
194-532
|
6d0s_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.708
|
61285.700
|
7.226
|
8.500
|
25.564
|
14.286
|
48.872
|
51.128
|
14.662
|
10.902
|
46.617
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
darkturquoise
|
1468.145
|
1428.027
|
1303.665
|
1519.068
|
1640.549
|
1535.075
|
2059.978
|
1710.434
|
1904.659
|
795.841
|
1271.049
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.360
|
— |
0.329
|
— | — |
0.434
|
— |
0.411
|
— | — | — | — | — |
No JSON data available for plots.