Hg_chrom9_TN10mRNA_17354
Organism: Heterodera glycines Gene Locus: chr9:3861556-3863402 Feature type: polypeptideProtein Sequence
Length: 379
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.767 | 1.104 | 0.336 | 0.364 | 0.44 | 0.474 | 0.848 | 1.583 | 1.759 | 1.711 | 0.88 | 2.483 | 1.466 | 0.812 | 1.023 | 1.206 | 0.865 | 0.76 | 3.044 | 0.931 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16393
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.841
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
1-32
|
0.984
|
— | — | — | — |
0.001
|
— | — |
0.056
|
0.950
|
0.013
|
0.104
|
0.071
|
0.060
|
0.059
|
0.021
|
0.141
|
0.012
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012831
|
1.000
|
1.000
|
Hsc_gene_18710.t1
|
Hsc_gene_18710.t1
|
— |
Q8BJ03.1 Cytochrome c oxidase assembly protein COX15 homolog [Mus musculus]
|
KAI1714378.1 cytochrome oxidase assembly protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006784|GO:0016020|GO:0016653
|
GO:0005575_0.881|GO:0110165_0.881|GO:0016020_0.846|GO:0005622_0.773|GO:0005737_0.754|GO:0043226_0.751|GO:0043229_0.751|GO:0043227_0.742|GO:0043231_0.731|GO:0008150_0.662|GO:0003674_0.586|GO:0005739_0.571|GO:0008152_0.512
|
IPR003780+37-367+|IPR023754+22-377_32-377+
|
— |
PF02628+37-367+Cytochrome_oxidase_assembly_protein
|
— |
PTHR23289+22-377+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-379
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.748
|
43094.930
|
10.666
|
30.000
|
18.470
|
15.567
|
38.786
|
61.214
|
13.984
|
4.485
|
44.327
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
1162.269
|
1559.281
|
951.847
|
1333.295
|
1277.758
|
1092.240
|
873.546
|
918.567
|
1133.633
|
1232.252
|
1189.987
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.941
|
-0.363
|
0.595
|
— |
-0.211
|
-0.316
|
-0.353
|
— | — | — | — | — | — |
No JSON data available for plots.