Hg_chrom9_TN10mRNA_17355
Organism: Heterodera glycines Gene Locus: chr9:3863905-3867082 Feature type: polypeptideProtein Sequence
Length: 468
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.82 | 0.795 | 0.583 | 0.663 | 0.926 | 0.986 | 0.712 | 2.564 | 1.567 | 1.271 | 0.615 | 2.388 | 2.374 | 0.945 | 1.09 | 1.068 | 0.595 | 0.745 | 1.479 | 0.754 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16394
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.866
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
golgi_apparatus
|
— |
PEHKRRV,KRRVMRHRH
|
— | — | — | — | — | — |
0.000
|
— | — |
0.095
|
0.085
|
0.013
|
0.088
|
0.451
|
0.551
|
0.597
|
0.001
|
0.319
|
0.008
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012832
|
1.000
|
1.000
|
Hsc_gene_18709.t1
|
Hsc_gene_18709.t1
|
— |
Q9VCY8.2 Adiponectin receptor protein [Drosophila melanogaster]
|
KAI1709201.1 hemolysin-III related domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.932|GO:0009987_0.766|GO:0065007_0.703|GO:0050789_0.688|GO:0005575_0.686|GO:0110165_0.686|GO:0016020_0.680|GO:0050896_0.673|GO:0050794_0.666|GO:0005886_0.643|GO:0071944_0.643|GO:0042221_0.568|GO:0051716_0.504
|
IPR004254+111-437_189-368+
|
— |
PF03006+189-368+Haemolysin-III_related
|
— |
PTHR20855+111-437+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-132
|
1.000
|
133-468
|
5lxa_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.721
|
53743.330
|
8.111
|
15.000
|
23.291
|
18.162
|
41.667
|
58.333
|
14.530
|
8.761
|
42.521
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
saddlebrown
|
1500.906
|
1828.886
|
1340.392
|
1162.467
|
1189.702
|
1077.397
|
1318.890
|
1239.754
|
1592.425
|
1938.088
|
1789.947
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.678
|
-0.791
|
— | — |
-0.128
|
0.302
|
— |
0.231
|
— | — | — | — | — |
No JSON data available for plots.