SCN Proteipedia

Hg_chrom9_TN10mRNA_17356

Organism: Heterodera glycines Gene Locus: chr9:3868802-3871714 Feature type: polypeptide

Protein Sequence

Length: 437

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.718	0.745	1.082	0.395	1.487	0.763	0.845	1.373	1.373	1.361	1.075	1.615	1.271	1.276	0.934	0.719	1.088	0.728	0.352	0.875	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16395	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	RKVTGKDSGKIFAMKVLKK	—	—	—	—	—	—	0.000	—	—	0.692	0.269	0.026	0.685	0.113	0.210	0.121	0.033	0.329	0.041

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012833	1.000	1.000	Hsc_gene_18708.t1	Hsc_gene_18708.t1	—	Q9NAH6.2 Ribosomal protein S6 kinase beta [Caenorhabditis elegans]	KAI1717181.1 protein kinase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004674\|GO:0005524\|GO:0006468	GO:0008150_0.960\|GO:0009987_0.932\|GO:0065007_0.915\|GO:0050789_0.909\|GO:0050794_0.874\|GO:0003674_0.855\|GO:0003824_0.855\|GO:0016740_0.855\|GO:0016772_0.818\|GO:0016301_0.816\|GO:0005575_0.809\|GO:0140096_0.808\|GO:0110165_0.804\|GO:0050896_0.803\|GO:0051716_0.776\|GO:0004672_0.775\|GO:0016773_0.775\|GO:0005622_0.765\|GO:0007154_0.710\|GO:0007165_0.702\|GO:0023052_0.702\|GO:0004674_0.666\|GO:0048518_0.610\|GO:0008152_0.593\|GO:0044237_0.593\|GO:0043170_0.581\|GO:0005737_0.551\|GO:0048522_0.547\|GO:0006793_0.545\|GO:0006796_0.545\|GO:0019538_0.542\|GO:0044238_0.542\|GO:0048519_0.538\|GO:0016020_0.522\|GO:0035556_0.520\|GO:0036211_0.520\|GO:0043412_0.520\|GO:0006468_0.513\|GO:0016310_0.513	IPR000719+83-338_83-342_84-330+\|IPR000961+330-399_338-391+\|IPR008271+206-218+\|IPR011009+81-399+\|IPR017441+89-115+\|IPR017892+350-389+	SM00133+338-391+\|SM00220+83-338+	PF00069+84-330+Protein_kinase_domain\|PF00433+350-389+Protein_kinase_C_terminal_domain	G3DSA:1.10.510.10:FF:000048+170-342+Protein_kinase_C\|G3DSA:3.30.200.20:FF:000587+83-166+Non-specific_serine/threonine_protein_kinase	PTHR24351+27-396+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	400-437	1.000	1-399	7n93_B	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.535	49047.060	5.372	-8.000	29.291	10.755	47.140	52.860	14.416	14.874	46.682

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	saddlebrown	1576.410	1940.821	1057.243	1236.829	1518.447	1830.335	2481.304	2006.844	773.225	1789.941	1354.206

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.106	-0.787	0.335	0.264	0.284	0.449	—	0.449	—	—	—	—	—

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