Hg_chrom9_TN10mRNA_17358
Organism: Heterodera glycines Gene Locus: chr9:3876001-3878113 Feature type: polypeptideProtein Sequence
Length: 187
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.622 | 1.119 | 0.972 | 1.66 | 0.535 | 0.686 | 0.637 | 1.604 | 1.07 | 1.012 | 0.648 | 1.573 | 1.634 | 0.514 | 1.419 | 1.222 | 0.964 | 1.134 | 2.879 | 1.416 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16397
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.790
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.378
|
0.389
|
0.210
|
0.163
|
0.612
|
0.344
|
0.348
|
0.010
|
0.041
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004408
|
2.000
|
1.000
|
Hsc_gene_7138.t1
|
— | — |
Q8TCQ1.1 E3 ubiquitin-protein ligase MARCHF1 [Homo sapiens]
|
KAI1703789.1 RING-variant domain-containing protein [Ditylenchus destructor]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270
|
GO:0008150_0.824|GO:0005575_0.759|GO:0110165_0.756|GO:0016020_0.692|GO:0005622_0.640|GO:0003674_0.639|GO:0043226_0.611|GO:0071944_0.611|GO:0043229_0.604|GO:0008152_0.600|GO:0043227_0.600|GO:0005886_0.598|GO:0043231_0.592|GO:0005737_0.591|GO:0044238_0.582|GO:0043170_0.551|GO:0009987_0.504
|
IPR011016+31-95_38-89_39-88+|IPR013083+22-95+
|
SM00744+38-89+
|
PF12906+39-88+RING-variant_domain
|
— |
PTHR46065+31-106+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-187
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.818
|
21727.910
|
8.399
|
8.000
|
22.995
|
17.647
|
44.920
|
55.080
|
14.439
|
8.556
|
50.267
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
blue
|
1005.457
|
653.247
|
566.597
|
655.523
|
661.162
|
808.228
|
478.619
|
992.334
|
675.032
|
2086.710
|
1481.705
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.435
|
-0.132
|
0.319
|
— |
0.305
|
-0.749
|
— |
-0.912
|
— | — | — | — | — |
No JSON data available for plots.