Hg_chrom9_TN10mRNA_17360
Organism: Heterodera glycines Gene Locus: chr9:3884219-3886951 Feature type: polypeptideProtein Sequence
Length: 481
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.088 | 0.629 | 0.907 | 0.717 | 1.178 | 0.48 | 1.064 | 0.936 | 1.94 | 1.264 | 0.945 | 0.978 | 1.097 | 0.8 | 0.933 | 1.158 | 0.648 | 1.292 | 0.16 | 0.489 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16399
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.667
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.417
|
0.313
|
0.215
|
0.565
|
0.128
|
0.200
|
0.138
|
0.274
|
0.115
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012836
|
1.000
|
1.000
|
Hsc_gene_18705.t1
|
Hsc_gene_18705.t1
|
— |
Q9WYJ1.1 L-threonine ammonia-lyase [Thermotoga maritima MSB8]
|
KAF7627124.1 PALP domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004794|GO:0006567
|
GO:0003674_0.805|GO:0008150_0.786|GO:0003824_0.738|GO:0009987_0.696|GO:0008152_0.630|GO:0044237_0.588|GO:0044281_0.550|GO:0016829_0.548|GO:0044238_0.544|GO:0005575_0.534|GO:0110165_0.527|GO:0006082_0.501|GO:0019752_0.501|GO:0043436_0.501
|
IPR001926+80-369+|IPR005789+87-460+|IPR036052+65-416_79-373_116-212+|IPR044561+394-461+|IPR050147+70-457+
|
— |
PF00291+80-369+Pyridoxal-phosphate_dependent_enzyme
|
G3DSA:3.40.50.1100:FF:000007+187-373+L-threonine_dehydratase_catabolic_TdcB
|
PTHR48078+70-457+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-12
|
1.000
|
13-481
|
2gn2_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.673
|
51511.580
|
6.250
|
-1.500
|
24.740
|
7.692
|
41.372
|
58.628
|
12.682
|
12.058
|
52.807
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
black
|
1706.368
|
419.893
|
817.534
|
1402.100
|
1368.287
|
2016.488
|
3417.184
|
2418.845
|
761.856
|
2446.341
|
1724.419
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.732
|
1.602
|
0.887
|
— |
0.574
|
0.772
|
— |
0.646
|
— | — | — | — | — |
No JSON data available for plots.