Hg_chrom9_TN10mRNA_17361
Organism: Heterodera glycines Gene Locus: chr9:3888480-3889591 Feature type: polypeptideProtein Sequence
Length: 217
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.536 | 0.857 | 0.838 | 0.953 | 1.075 | 0.591 | 1.042 | 1.152 | 2.151 | 0.996 | 1.257 | 2.169 | 1.152 | 1.063 | 0.94 | 0.922 | 0.907 | 0.908 | 0.354 | 0.813 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16400
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.121
|
0.816
|
0.156
|
0.269
|
0.009
|
0.023
|
0.006
|
0.193
|
0.171
|
0.112
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012837
|
1.000
|
1.000
|
Hsc_gene_18703.t1
|
Hsc_gene_18703.t1
|
— |
P34673.1 Fumarylacetoacetate hydrolase domain-containing protein 1 [Caenorhabditis elegans]
|
KAI1725970.1 fumarylacetoacetate (FAA) hydrolase family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824
|
GO:0008150_0.807|GO:0003674_0.756|GO:0005575_0.755|GO:0110165_0.743|GO:0009987_0.704|GO:0005622_0.688|GO:0008152_0.684|GO:0005737_0.648|GO:0003824_0.634|GO:0044237_0.630|GO:0016020_0.615|GO:0043226_0.598|GO:0043229_0.583|GO:0044281_0.573|GO:0043227_0.565|GO:0043231_0.551|GO:0006082_0.547|GO:0019752_0.546|GO:0043436_0.546
|
IPR011234+16-213+|IPR036663+1-217_14-211+
|
— |
PF01557+16-213+Fumarylacetoacetate_(FAA)_hydrolase_family
|
G3DSA:3.90.850.10:FF:000003+3-217+Fumarylacetoacetate_hydrolase_domain-containing_1
|
PTHR11820+13-216+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-217
|
6sbj_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.852
|
24111.100
|
8.477
|
6.500
|
26.267
|
9.677
|
44.240
|
55.760
|
15.207
|
11.060
|
47.926
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1394.391
|
903.909
|
1145.746
|
911.496
|
1014.128
|
957.314
|
777.467
|
971.261
|
1313.699
|
2609.689
|
2054.265
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.112
|
-0.125
|
-0.221
|
0.122
|
— |
-0.290
|
— | — | — | — | — | — | — |
No JSON data available for plots.