Hg_chrom9_TN10mRNA_17365
Organism: Heterodera glycines Gene Locus: chr9:3899298-3899972 Feature type: polypeptideProtein Sequence
Length: 151
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.385 | 1.386 | 1.204 | 0.228 | 1.545 | 0.509 | 0.788 | 1.325 | 1.325 | 1.074 | 1.706 | 1.169 | 1.656 | 0.255 | 0.811 | 1.23 | 1.194 | 0.502 | 1.528 | 0.974 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16404
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.408
|
0.511
|
0.095
|
0.745
|
0.435
|
0.084
|
0.518
|
0.025
|
0.268
|
0.207
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012841
|
1.000
|
1.000
|
Hsc_gene_18698.t1
|
Hsc_gene_18698.t1
|
— |
Q23092.1 Fatty acid-binding protein homolog 4 [Caenorhabditis elegans]
|
KAI1724163.1 fatty acid-binding protein like protein 4 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008289
|
GO:0005575_0.908|GO:0110165_0.892|GO:0005622_0.846|GO:0008150_0.665|GO:0005737_0.628|GO:0016020_0.626|GO:0043226_0.623|GO:0043229_0.616|GO:0003674_0.604|GO:0009987_0.602|GO:0043227_0.588|GO:0043231_0.584|GO:0005488_0.550
|
IPR000463+11-33_74-90_129-149+|IPR012674+8-149_9-150+|IPR040094+3-149+
|
— | — | — |
PTHR22725+3-149+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-151
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.663
|
17484.650
|
6.875
|
1.000
|
33.775
|
13.907
|
57.616
|
42.384
|
17.881
|
15.894
|
43.709
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
1246.187
|
470.402
|
862.971
|
1539.770
|
1992.917
|
1230.301
|
2235.502
|
787.459
|
826.758
|
1412.254
|
1161.327
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.646
|
1.574
|
0.944
|
0.341
|
-0.681
|
0.871
|
-0.748
|
1.646
|
— | — | — | — | — |
No JSON data available for plots.