Hg_chrom9_TN10mRNA_17368
Organism: Heterodera glycines Gene Locus: chr9:3911085-3912509 Feature type: polypeptideProtein Sequence
Length: 252
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.508 | 1.107 | 0.722 | 0.274 | 1.257 | 0.916 | 0.661 | 1.587 | 1.146 | 0.965 | 1.383 | 1.867 | 1.874 | 1.603 | 1.215 | 0.454 | 0.651 | 0.902 | 2.137 | 1.401 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16407
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RRPPSTKKGGGK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.036
|
0.978
|
0.041
|
0.119
|
0.018
|
0.020
|
0.027
|
0.015
|
0.048
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012842
|
1.000
|
1.000
|
Hsc_gene_18693.t1
|
Hsc_gene_18693.t1;Hsc_gene_18715.t1
|
— |
Q5M818.1 Large ribosomal subunit protein uL16m [Rattus norvegicus]
|
KAF7634398.1 Ribosomal_L16 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412|GO:0019843
|
GO:0005575_0.867|GO:0110165_0.861|GO:0005622_0.823|GO:0005737_0.781|GO:0016020_0.774|GO:0043226_0.774|GO:0043229_0.765|GO:0043227_0.737|GO:0043231_0.732
|
IPR000114+72-203+|IPR036920+71-241_82-205+|IPR047873+73-200+
|
— |
PF00252+73-200+Ribosomal_protein_L16p/L10e
|
— |
PTHR12220+72-203+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-252
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.817
|
29874.540
|
9.798
|
13.000
|
29.762
|
17.460
|
45.238
|
54.762
|
18.254
|
11.508
|
40.873
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey60
|
1307.796
|
979.561
|
911.916
|
1497.623
|
1661.038
|
1129.631
|
954.403
|
983.934
|
1048.977
|
1890.582
|
1529.894
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.333
|
0.475
|
0.824
|
0.117
|
-0.541
|
-0.233
|
— | — | — | — | — | — | — |
No JSON data available for plots.