Hg_chrom9_TN10mRNA_17373
Organism: Heterodera glycines Gene Locus: chr9:3920260-3921319 Feature type: polypeptideProtein Sequence
Length: 260
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.76 | 0.984 | 0.839 | 1.061 | 0.833 | 0.986 | 0.962 | 1.346 | 1.197 | 0.832 | 0.408 | 0.452 | 1.709 | 1.701 | 1.099 | 1.703 | 0.757 | 1.049 | 0.296 | 0.792 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16412
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.977
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.150
|
0.327
|
0.075
|
0.260
|
0.116
|
0.151
|
0.080
|
0.203
|
0.457
|
0.796
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000627
|
2.000
|
5.000
|
Hsc_gene_18697.t1;Hsc_gene_18697.t2;Hsc_gene_18697.t3;Hsc_gene_18697.t4;Hsc_gene_18697.t5
|
Hsc_gene_18697.t2;Hsc_gene_18697.t3;Hsc_gene_18697.t4
|
— | — |
KAI1702286.1 CUB domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.935|GO:0009987_0.850|GO:0005575_0.777|GO:0110165_0.777|GO:0016020_0.669|GO:0032502_0.627|GO:0048856_0.627|GO:0071944_0.562|GO:0005886_0.535|GO:0032501_0.514
|
IPR000859+19-79_225-257_225-260+|IPR035914+22-177_28-84_215-260_225-258+|IPR053207+36-257+
|
— |
PF00431+225-257+CUB_domain
|
— |
PTHR47537+36-257+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-260
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.895
|
28160.590
|
6.370
|
-0.500
|
20.385
|
11.923
|
45.000
|
55.000
|
10.769
|
9.615
|
58.846
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
95.759
|
14.551
|
16.917
|
10.488
|
24.365
|
12.421
|
42.185
|
104.820
|
0.000
|
334.292
|
191.024
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
1.186
|
— |
1.774
|
2.976
|
-1.171
|
— |
4.248
|
— | — | — |
No JSON data available for plots.