Hg_chrom9_TN10mRNA_17374
Organism: Heterodera glycines Gene Locus: chr9:3925691-3926389 Feature type: polypeptideProtein Sequence
Length: 142
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.556 | 1.474 | 0.384 | 0.0 | 0.235 | 1.264 | 0.503 | 1.408 | 1.252 | 0.571 | 1.921 | 1.657 | 0.587 | 0.677 | 1.725 | 1.308 | 0.693 | 1.28 | 0.542 | 0.829 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16413
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.770
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKHK,RRASQILRSQKTKAK,SQKTKAKPATVRKGKA
|
15-35
|
0.993
|
— | — | — | — |
0.000
|
— | — |
0.399
|
0.238
|
0.050
|
0.521
|
0.239
|
0.073
|
0.104
|
0.000
|
0.043
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012843
|
1.000
|
1.000
|
Hsc_gene_18689.t1
|
Hsc_gene_18689.t1
|
— |
Q21930.3 Large ribosomal subunit protein eL28 [Caenorhabditis elegans]
|
KAH7700962.1 60S ribosomal protein L28 [Aphelenchus avenae]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.923|GO:0110165_0.911|GO:0005622_0.877|GO:0043226_0.847|GO:0043229_0.846|GO:0005737_0.766|GO:0043228_0.754|GO:0043232_0.754|GO:0005840_0.693|GO:0005829_0.691|GO:0022626_0.691|GO:0003674_0.676|GO:0003735_0.577|GO:0005198_0.577|GO:0032991_0.566|GO:1990904_0.562|GO:0044391_0.538
|
IPR002672+7-134+|IPR029004+11-126+
|
— |
PF01778+11-126+Ribosomal_L28e_protein_family
|
— |
PTHR10544+7-134+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
101-142
|
1.000
|
1-100
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.934
|
15771.390
|
12.031
|
27.000
|
27.465
|
8.451
|
52.113
|
47.887
|
23.944
|
3.521
|
51.408
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
6254.722
|
2332.909
|
4560.783
|
8268.560
|
8438.087
|
6316.744
|
3818.867
|
2374.887
|
9512.994
|
6688.100
|
7898.769
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.738
|
1.689
|
0.967
|
— |
-0.402
|
-0.716
|
-1.518
|
0.829
|
— | — | — | — | — |
No JSON data available for plots.