Hg_chrom9_TN10mRNA_17375
Organism: Heterodera glycines Gene Locus: chr9:3926467-3928693 Feature type: polypeptideProtein Sequence
Length: 499
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.979 | 1.119 | 1.093 | 0.346 | 1.369 | 1.439 | 0.406 | 0.802 | 1.514 | 1.517 | 0.972 | 2.004 | 1.058 | 0.617 | 0.982 | 0.916 | 0.723 | 0.911 | 0.617 | 1.061 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16414
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRQK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.643
|
0.108
|
0.005
|
0.603
|
0.091
|
0.157
|
0.083
|
0.002
|
0.042
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012844
|
1.000
|
1.000
|
Hsc_gene_18688.t1
|
Hsc_gene_18688.t1
|
— |
Q99LD4.1 COP9 signalosome complex subunit 1 [Mus musculus]
|
KAH7713327.1 G protein pathway suppressor 1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.828|GO:0110165_0.815|GO:0005622_0.765|GO:0008150_0.752|GO:0016020_0.742|GO:0043226_0.704|GO:0043229_0.703|GO:0043227_0.658|GO:0043231_0.644|GO:0009987_0.638|GO:0032991_0.554|GO:0005634_0.528
|
IPR000717+290-462_377-457_391-484+|IPR019585+56-495+|IPR036390+387-467+|IPR045135+133-339+
|
SM00088+391-484+
|
PF01399+377-457+PCI_domain|PF10602+133-339+26S_proteasome_subunit_RPN7
|
— |
PTHR14145+56-495+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-60
|
1.000
|
61-499
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.675
|
56940.300
|
4.972
|
-11.000
|
27.054
|
9.820
|
48.297
|
51.703
|
12.826
|
14.228
|
43.687
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1452.259
|
1416.991
|
1395.279
|
1618.004
|
2016.237
|
1748.020
|
1615.069
|
1572.154
|
497.142
|
1712.619
|
1191.700
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.252
|
— |
0.323
|
0.286
|
-0.191
|
— |
-0.257
|
0.180
|
— | — | — | — | — |
No JSON data available for plots.