Hg_chrom9_TN10mRNA_17376
Organism: Heterodera glycines Gene Locus: chr9:3929606-3932269 Feature type: polypeptideProtein Sequence
Length: 504
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.554 | 1.292 | 0.938 | 0.684 | 0.926 | 1.272 | 0.591 | 1.29 | 1.675 | 1.636 | 0.511 | 1.284 | 1.323 | 0.916 | 1.579 | 0.85 | 0.976 | 0.872 | 0.916 | 0.934 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16415
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.664
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KGRKLKKKR
|
— | — | — | — | — | — |
0.001
|
— | — |
0.525
|
0.208
|
0.005
|
0.541
|
0.143
|
0.290
|
0.150
|
0.056
|
0.270
|
0.095
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012845
|
1.000
|
1.000
|
Hsc_gene_18687.t1
|
Hsc_gene_18687.t1
|
— |
Q9TYN3.1 Transcription initiation factor TFIID subunit 2 [Caenorhabditis elegans]
|
KAF7637893.1 Peptidase_M1 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005669
|
GO:0008150_0.795|GO:0009987_0.743|GO:0005575_0.678|GO:0110165_0.676|GO:0008152_0.638|GO:0044238_0.627|GO:0044237_0.616|GO:0009058_0.611|GO:0043170_0.604|GO:0044249_0.595|GO:0009059_0.580|GO:0006139_0.567|GO:0010467_0.567|GO:0034654_0.555|GO:0090304_0.553|GO:0141187_0.547|GO:0016070_0.545|GO:0005622_0.543|GO:0032774_0.543|GO:0016020_0.541|GO:0006351_0.534|GO:0006366_0.525|GO:0006352_0.519|GO:0006367_0.516
|
IPR016024+159-445+|IPR037813+2-499+
|
— | — | — |
PTHR15137+2-499+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-504
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.688
|
57997.790
|
7.838
|
8.500
|
24.405
|
11.706
|
46.825
|
53.175
|
13.690
|
10.714
|
44.841
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkturquoise
|
1783.681
|
1887.665
|
2161.044
|
2056.726
|
1760.216
|
1402.673
|
1542.421
|
2776.001
|
1444.051
|
1625.536
|
1547.756
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
-0.257
|
-0.313
|
0.147
|
0.879
|
-0.705
|
— | — | — | — | — |
No JSON data available for plots.