Hg_chrom9_TN10mRNA_17377
Organism: Heterodera glycines Gene Locus: chr9:3932331-3934229 Feature type: polypeptideProtein Sequence
Length: 451
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.593 | 0.98 | 1.129 | 1.07 | 0.813 | 1.478 | 0.502 | 0.887 | 1.626 | 1.618 | 0.672 | 0.783 | 2.033 | 0.981 | 1.086 | 0.982 | 0.945 | 0.873 | 0.853 | 0.717 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16416
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKGHLVIRMLEKRLPK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.378
|
0.116
|
0.038
|
0.648
|
0.161
|
0.183
|
0.086
|
0.017
|
0.229
|
0.134
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_18687.t1
|
— |
Q9TYN3.1 Transcription initiation factor TFIID subunit 2 [Caenorhabditis elegans]
|
KAI1711320.1 peptidase family m1 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005669|GO:0008237|GO:0008270
|
GO:0008150_0.741|GO:0005575_0.726|GO:0110165_0.726|GO:0009987_0.688|GO:0008152_0.572|GO:0016020_0.567|GO:0005622_0.560|GO:0044238_0.557|GO:0043170_0.529|GO:0044237_0.510|GO:0009058_0.503
|
IPR014782+270-450+|IPR027268+250-451+|IPR037813+12-450+|IPR042097+14-241_19-242+
|
— |
PF01433+270-450+Peptidase_family_M1_domain
|
— |
PTHR15137+12-450+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-451
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.536
|
51506.400
|
6.105
|
-2.000
|
22.616
|
12.639
|
45.233
|
54.767
|
11.530
|
11.086
|
46.341
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
701.774
|
1141.243
|
1329.398
|
1130.302
|
963.236
|
739.531
|
536.325
|
966.871
|
642.232
|
35.999
|
295.813
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.151
|
-0.126
|
-0.262
|
-0.367
|
-0.456
|
— |
-0.711
|
3.997
|
— |
5.446
|
— | — |
No JSON data available for plots.