Hg_chrom9_TN10mRNA_17378
Organism: Heterodera glycines Gene Locus: chr9:3934883-3937329 Feature type: polypeptideProtein Sequence
Length: 548
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.828 | 1.061 | 0.63 | 1.133 | 0.7 | 0.608 | 0.912 | 1.095 | 1.338 | 1.529 | 0.553 | 1.61 | 2.078 | 0.983 | 0.819 | 0.991 | 0.957 | 1.244 | 1.263 | 0.644 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16417
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.020
|
0.114
|
0.011
|
0.140
|
0.423
|
0.755
|
0.439
|
0.012
|
0.608
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012846
|
1.000
|
1.000
|
Hsc_gene_18686.t1
|
Hsc_gene_18686.t1
|
— |
Q9SS86.2 Lysine histidine transporter-like 4 [Arabidopsis thaliana]
|
KAI1706338.1 transmembrane amino acid transporter protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.798|GO:0110165_0.798|GO:0008150_0.790|GO:0009987_0.732|GO:0016020_0.701|GO:0006810_0.669|GO:0051179_0.669|GO:0051234_0.669|GO:0003674_0.659|GO:0055085_0.573|GO:0043226_0.541|GO:0005215_0.536|GO:0022857_0.536|GO:0005622_0.531|GO:0005737_0.531|GO:0043227_0.526
|
IPR013057+51-416+
|
— |
PF01490+51-416+Transmembrane_amino_acid_transporter_protein
|
— |
PTHR48017+52-456+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-548
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.759
|
60473.570
|
7.329
|
6.000
|
17.518
|
13.504
|
37.226
|
62.774
|
9.854
|
7.664
|
52.190
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
turquoise
|
753.677
|
84.173
|
383.702
|
740.799
|
820.314
|
1266.905
|
1062.924
|
1442.141
|
97.622
|
1048.763
|
641.131
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.960
|
3.001
|
1.057
|
— |
0.642
|
-0.244
|
— |
-0.299
|
-3.551
|
— | — | — | — |
No JSON data available for plots.