Hg_chrom9_TN10mRNA_17379
Organism: Heterodera glycines Gene Locus: chr9:3938486-3940421 Feature type: polypeptideProtein Sequence
Length: 419
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.777 | 1.554 | 0.824 | 0.411 | 1.273 | 1.102 | 0.597 | 0.955 | 0.955 | 0.742 | 1.085 | 2.246 | 2.055 | 1.102 | 1.023 | 1.432 | 0.978 | 0.434 | 1.285 | 0.772 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16418
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.498
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRAMRQIMATEEPKMMKK
|
— | — |
26-57
|
0.893
|
— | — |
0.000
|
— | — |
0.767
|
0.059
|
0.019
|
0.454
|
0.052
|
0.102
|
0.082
|
0.038
|
0.031
|
0.113
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012847
|
1.000
|
1.000
|
Hsc_gene_18685.t1
|
Hsc_gene_18685.t1
|
— | — |
KAF7639356.1 DUF1768 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.951|GO:0003674_0.862|GO:0008152_0.795|GO:0005575_0.733|GO:0110165_0.723|GO:0003824_0.704|GO:0005622_0.691|GO:0009987_0.685|GO:0016787_0.681|GO:1901135_0.681|GO:0016020_0.656|GO:0016798_0.654|GO:0016799_0.650|GO:0043226_0.648|GO:0043229_0.637|GO:0043227_0.598|GO:0005737_0.591|GO:0044238_0.570|GO:0043231_0.569|GO:0044237_0.558|GO:0006139_0.531
|
IPR012816+217-365_219-365_221-363+|IPR037238+211-367_211-374+
|
— |
PF08719+219-365+NADAR_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-31;105-151;391-419
|
2.000
|
32-104;152-390
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.840
|
47868.760
|
7.422
|
4.000
|
26.253
|
13.604
|
53.222
|
46.778
|
14.081
|
12.172
|
48.687
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1000.830
|
1287.091
|
964.045
|
780.027
|
734.408
|
653.818
|
765.367
|
853.169
|
949.879
|
1402.002
|
1208.235
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.647
|
-0.860
|
-0.196
|
-0.119
|
-0.153
|
0.235
|
0.278
|
— | — | — | — | — | — |
No JSON data available for plots.