Hg_chrom9_TN10mRNA_17381
Organism: Heterodera glycines Gene Locus: chr9:3944860-3953081 Feature type: polypeptideProtein Sequence
Length: 816
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.769 | 0.969 | 0.891 | 0.718 | 0.797 | 1.634 | 1.08 | 1.164 | 1.062 | 1.043 | 0.724 | 1.298 | 1.498 | 1.508 | 1.576 | 1.103 | 0.683 | 0.631 | 0.943 | 0.577 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16420
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.975
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RRRR,RKRRK,RRKRK
|
22-45
|
0.978
|
— | — | — | — |
0.000
|
— | — |
0.209
|
0.186
|
0.058
|
0.105
|
0.154
|
0.070
|
0.190
|
0.094
|
0.178
|
0.885
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012849
|
1.000
|
1.000
|
Hsc_gene_18679.t1
|
Hsc_gene_18679.t1;Hsc_gene_18683.t1
|
— |
Q9N2V2.5 Zinc metalloproteinase nas-30 [Caenorhabditis elegans]
|
KAF7639357.1 Metalloendopeptidase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.780|GO:0005575_0.657|GO:0110165_0.657|GO:0003674_0.595|GO:0032501_0.577|GO:0032502_0.518|GO:0048856_0.518
|
IPR000742+614-625+|IPR000859+636-740+|IPR001506+395-590_403-589_425-443_478-496_497-514_536-551_576-589+|IPR006026+400-541+|IPR024079+347-592+|IPR034035+407-588+|IPR035914+633-738+
|
SM00042+636-740+|SM00235+400-541+
|
PF01400+403-589+Astacin_(Peptidase_family_M12A)
|
G3DSA:3.40.390.10:FF:000028+342-592+Zinc_metalloproteinase
|
PTHR10127+349-708+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
85-363
|
2.000
|
1-84;364-816
|
4gwn_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.952
|
90819.050
|
9.602
|
32.500
|
24.510
|
10.907
|
46.936
|
53.064
|
14.828
|
9.681
|
50.735
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
226.369
|
226.169
|
114.373
|
67.169
|
328.590
|
1250.180
|
81.566
|
345.311
|
33.974
|
59.876
|
48.775
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.209
|
-1.889
|
-0.662
|
2.259
|
1.943
|
-3.929
|
-1.972
|
-1.935
|
— | — | — | — | — |
No JSON data available for plots.