Hg_chrom9_TN10mRNA_17383
Organism: Heterodera glycines Gene Locus: chr9:3946862-3949967 Feature type: polypeptideProtein Sequence
Length: 542
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.472 | 1.158 | 1.107 | 0.382 | 1.353 | 1.845 | 0.505 | 0.923 | 1.64 | 1.496 | 0.923 | 1.628 | 1.23 | 0.674 | 0.979 | 0.817 | 0.786 | 0.811 | 0.568 | 1.682 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16422
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.615
|
0.114
|
0.017
|
0.641
|
0.177
|
0.185
|
0.186
|
0.003
|
0.033
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012851
|
1.000
|
1.000
|
Hsc_gene_18681.t1
|
Hsc_gene_18680.t1;Hsc_gene_18681.t1
|
— |
A8PHP4.1 Eukaryotic translation initiation factor 3 subunit L [Brugia malayi]
|
KAF7639359.1 Eukaryotic translation initiation factor 3 subunit L [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003743|GO:0005737|GO:0005852
|
GO:0005575_0.917|GO:0110165_0.916|GO:0005622_0.850|GO:0005737_0.821|GO:0008150_0.738|GO:0009987_0.681|GO:0016020_0.676|GO:0008152_0.579|GO:0044238_0.568|GO:0044237_0.558|GO:0009058_0.548|GO:0043170_0.543|GO:0044249_0.528|GO:0019538_0.525|GO:0009059_0.521|GO:0010467_0.507|GO:0032991_0.501
|
IPR000717+297-493+|IPR019382+10-524_10-530_107-521+
|
— |
PF10255+107-521+RNA_polymerase_I-associated_factor_PAF67
|
— |
PTHR13242+10-530+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-19
|
1.000
|
20-542
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.674
|
63399.310
|
4.945
|
-13.000
|
26.937
|
12.731
|
49.631
|
50.369
|
12.731
|
14.207
|
39.852
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.