Hg_chrom9_TN10mRNA_17384
Organism: Heterodera glycines Gene Locus: chr9:3953124-3959048 Feature type: polypeptideProtein Sequence
Length: 486
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.598 | 0.718 | 1.309 | 0.851 | 0.72 | 1.055 | 0.98 | 1.749 | 0.869 | 1.196 | 0.592 | 1.573 | 1.2 | 1.464 | 1.134 | 1.176 | 0.742 | 1.154 | 1.899 | 0.666 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16423
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.344
|
0.258
|
0.057
|
0.609
|
0.165
|
0.283
|
0.140
|
0.214
|
0.312
|
0.107
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012852
|
1.000
|
1.000
|
Hsc_gene_18677.t1
|
Hsc_gene_18677.t1
|
— |
Q13228.2 Methanethiol oxidase [Homo sapiens]
|
KAI1717475.1 56kDa selenium binding protein (SBP56) domain-containing protein [Ditylenchus destructor]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008430
|
GO:0008150_0.711|GO:0003674_0.685|GO:0005575_0.684|GO:0110165_0.684|GO:0009987_0.630|GO:0005622_0.594|GO:0005488_0.585
|
IPR008826+14-485_16-485+
|
— |
PF05694+16-485+56kDa_selenium_binding_protein_(SBP56)
|
— |
PTHR23300+14-485+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3
|
1.000
|
4-486
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.727
|
54122.450
|
6.354
|
-1.500
|
24.486
|
12.551
|
44.444
|
55.556
|
12.963
|
11.523
|
54.115
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
956.068
|
253.983
|
954.476
|
749.559
|
736.226
|
2370.324
|
1678.973
|
2331.347
|
396.355
|
482.447
|
445.551
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.681
|
1.424
|
-0.240
|
— |
1.701
|
-0.487
|
— | — | — | — | — | — | — |
No JSON data available for plots.