Hg_chrom9_TN10mRNA_17389
Organism: Heterodera glycines Gene Locus: chr9:3970963-3972426 Feature type: polypeptideProtein Sequence
Length: 205
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.624 | 0.794 | 1.064 | 0.0 | 1.22 | 0.25 | 1.51 | 1.707 | 1.409 | 0.791 | 1.183 | 1.148 | 2.575 | 0.657 | 0.796 | 0.697 | 0.88 | 1.404 | 0.75 | 0.574 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16428
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_18674
|
— |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— | — | — | — | — | — |
1-20
|
0.992
|
1.000
|
0.000
|
0.000
|
0.346
|
0.336
|
0.157
|
0.533
|
0.441
|
0.166
|
0.074
|
0.061
|
0.159
|
0.277
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012856
|
1.000
|
1.000
|
Hsc_gene_18674.t1
|
Hsc_gene_18674.t1
|
— |
P52013.2 Peptidyl-prolyl cis-trans isomerase 5 [Caenorhabditis elegans]
|
KAH7716816.1 cyclophilin-type peptidyl-prolyl cis-trans isomerase-15 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000413|GO:0003755|GO:0006457
|
GO:0005575_0.770|GO:0110165_0.742|GO:0003674_0.601|GO:0005622_0.555|GO:0005737_0.555|GO:0008150_0.545|GO:0016020_0.545|GO:0003824_0.503
|
IPR002130+32-190_33-188_49-64_78-90_122-137_137-149_150-165+|IPR020892+73-90+|IPR024936+15-196+|IPR029000+18-202_26-194+
|
— |
PF00160+33-188+Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD
|
G3DSA:2.40.100.10:FF:000001+18-202+Peptidyl-prolyl_cis-trans_isomerase
|
PTHR11071+28-191+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-205
|
1h0p_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.675
|
22637.800
|
6.613
|
0.500
|
28.293
|
15.610
|
42.927
|
57.073
|
15.122
|
13.171
|
50.244
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
sienna3
|
9024.124
|
1400.355
|
4196.570
|
8361.185
|
17509.232
|
15909.644
|
3883.359
|
5472.560
|
15037.416
|
6927.640
|
10403.259
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.355
|
2.441
|
1.102
|
1.034
|
— |
-2.026
|
-1.644
|
-0.353
|
— | — | — | — | — |