Hg_chrom9_TN10mRNA_17390
Organism: Heterodera glycines Gene Locus: chr9:3973039-3977054 Feature type: polypeptideProtein Sequence
Length: 647
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.809 | 1.294 | 0.871 | 0.959 | 1.236 | 1.625 | 0.754 | 3.168 | 1.099 | 1.128 | 0.937 | 0.727 | 0.902 | 0.892 | 0.883 | 1.214 | 0.684 | 0.796 | 0.357 | 0.636 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16429
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.981
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RHRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.855
|
0.063
|
0.007
|
0.302
|
0.041
|
0.043
|
0.021
|
0.012
|
0.073
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012857
|
1.000
|
1.000
|
Hsc_gene_18673.t1
|
Hsc_gene_18673.t1
|
— | — |
KAF7639498.1 C2H2-type domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.380
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR013087+21-44_23-44_50-74_349-373_379-402_557-581_587-612+|IPR050527+106-609+
|
SM00355+21-44_50-74_349-373_379-402_557-581_587-612+
|
— | — |
PTHR24388+106-609+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
119-239;395-551
|
3.000
|
1-118;240-394;552-647
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.681
|
72179.780
|
6.906
|
9.500
|
29.057
|
12.210
|
53.632
|
46.368
|
16.847
|
12.210
|
48.995
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1582.579
|
4743.344
|
2186.746
|
1409.852
|
1515.677
|
1686.538
|
2661.331
|
1939.567
|
628.551
|
398.724
|
497.221
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.346
|
-1.887
|
-0.525
|
— |
0.168
|
0.669
|
— |
0.598
|
— | — | — | — | — |
No JSON data available for plots.