Hg_chrom9_TN10mRNA_17392
Organism: Heterodera glycines Gene Locus: chr9:3979830-3981053 Feature type: polypeptideProtein Sequence
Length: 262
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.754 | 0.799 | 0.972 | 0.526 | 1.018 | 0.979 | 0.545 | 1.336 | 1.187 | 1.702 | 1.388 | 1.796 | 2.014 | 0.807 | 1.48 | 0.927 | 0.751 | 0.289 | 0.881 | 0.898 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16431
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.707
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KKEMQNFLSQKGFDLRKLK
|
10-33
|
0.992
|
— | — | — | — |
0.000
|
— | — |
0.069
|
0.950
|
0.009
|
0.206
|
0.059
|
0.065
|
0.102
|
0.024
|
0.133
|
0.080
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012859
|
1.000
|
1.000
|
Hsc_gene_18671.t1
|
Hsc_gene_18671.t1
|
— | — |
KHN85442.1 ATP synthase subunit s, mitochondrial [Toxocara canis]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.928|GO:0005575_0.914|GO:0110165_0.909|GO:0005622_0.894|GO:0009987_0.879|GO:0043226_0.847|GO:0043229_0.845|GO:0016020_0.832|GO:0005737_0.810|GO:0043227_0.801|GO:0043231_0.777|GO:0071840_0.754|GO:0016043_0.736|GO:0006996_0.710|GO:0044085_0.698|GO:0022607_0.688|GO:0043933_0.685|GO:0065003_0.683|GO:0007005_0.676|GO:0005739_0.670|GO:0010257_0.670|GO:0032981_0.670|GO:0033108_0.670|GO:0097250_0.670
|
IPR001611+139-161+|IPR032675+14-227+
|
— |
PF13516+139-161+Leucine_Rich_repeat
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-262
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.644
|
30598.560
|
10.103
|
16.500
|
30.534
|
14.122
|
48.855
|
51.145
|
19.084
|
11.450
|
38.550
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
961.379
|
424.487
|
464.122
|
569.934
|
711.144
|
517.681
|
659.413
|
615.156
|
1011.920
|
1961.368
|
1554.461
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.288
|
0.406
|
0.287
|
-0.443
|
0.359
|
— |
0.242
|
— | — | — | — | — |
No JSON data available for plots.