Hg_chrom9_TN10mRNA_17393
Organism: Heterodera glycines Gene Locus: chr9:3981297-3982011 Feature type: polypeptideProtein Sequence
Length: 151
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.386 | 0.462 | 0.843 | 0.228 | 0.883 | 1.189 | 1.34 | 0.993 | 1.03 | 0.716 | 1.104 | 1.558 | 0.736 | 0.891 | 1.892 | 0.757 | 1.086 | 1.304 | 0.0 | 0.195 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16432
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.679
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KGGRRGRRL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.844
|
0.237
|
0.147
|
0.538
|
0.261
|
0.081
|
0.167
|
0.009
|
0.075
|
0.095
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012860
|
1.000
|
1.000
|
Hsc_gene_18670.t1
|
Hsc_gene_18670.t1
|
— |
P48150.1 Small ribosomal subunit protein uS11 [Caenorhabditis elegans]
|
KAI1719516.1 ribosomal protein s11 domain-containing protein [Ditylenchus destructor];KAI1720629.1 ribosomal protein s11 domain-containing protein [Ditylenchus destructor]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.905|GO:0110165_0.895|GO:0005622_0.743|GO:0005737_0.667|GO:0043226_0.667|GO:0043229_0.665|GO:0003674_0.596|GO:0016020_0.583|GO:0043228_0.515|GO:0043232_0.514
|
IPR001971+1-148_4-145_4-148_29-147+|IPR018102+116-138+|IPR036967+1-151+
|
— |
PF00411+29-147+Ribosomal_protein_S11
|
G3DSA:3.30.420.80:FF:000002+1-151+40S_ribosomal_protein_S14
|
PTHR11759+4-145+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-19;91-151
|
1.000
|
20-90
|
9cai_AO
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.688
|
16106.450
|
10.992
|
11.500
|
28.477
|
5.298
|
47.020
|
52.980
|
18.543
|
9.934
|
55.629
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
6360.363
|
2232.220
|
4692.973
|
8975.835
|
8521.124
|
6635.279
|
3613.474
|
1978.974
|
5604.809
|
9879.277
|
8047.362
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.843
|
1.871
|
1.044
|
-0.107
|
-0.345
|
-0.867
|
-1.853
|
1.012
|
— | — | — | — | — |
No JSON data available for plots.