Hg_chrom9_TN10mRNA_17394
Organism: Heterodera glycines Gene Locus: chr9:3982077-3982875 Feature type: polypeptideProtein Sequence
Length: 184
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.695 | 1.011 | 1.383 | 0.562 | 0.996 | 1.533 | 0.647 | 0.815 | 1.57 | 1.102 | 1.07 | 1.598 | 1.51 | 0.941 | 1.109 | 1.087 | 0.624 | 0.741 | 0.418 | 1.119 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16433
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
mitochondrion
|
— |
RKRRLDPEYKQKIRQNRK,KRRLDPEYKQKIRQNRKQK,RRLDPEYKQKIRQNRKQKQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.282
|
0.776
|
0.159
|
0.216
|
0.280
|
0.105
|
0.122
|
0.471
|
0.069
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012861
|
1.000
|
1.000
|
Hsc_gene_18669.t1
|
Hsc_gene_18669.t1
|
— |
Q6DH66.1 Mitochondrial import receptor subunit TOM20 homolog B [Danio rerio]
|
KAH7723269.1 MAS20 protein import receptor containing protein [Aphelenchus avenae]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005742|GO:0006605|GO:0006886
|
GO:0005575_0.901|GO:0110165_0.896|GO:0005622_0.848|GO:0016020_0.820|GO:0005737_0.798|GO:0043226_0.791|GO:0043229_0.775|GO:0043227_0.752|GO:0043231_0.741|GO:0003674_0.625|GO:0008150_0.594|GO:0005739_0.566|GO:0009987_0.539
|
IPR002056+14-144_20-134_26-47_68-90_105-125+|IPR022422+10-27_68-81_83-97_102-111_113-125_129-146+|IPR023392+61-151_66-143+
|
— |
PF02064+20-134+MAS20_protein_import_receptor
|
— |
PTHR12430+14-144+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-184
|
9eij_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.626
|
20990.870
|
6.245
|
-0.500
|
27.717
|
11.413
|
49.457
|
50.543
|
14.130
|
13.587
|
46.196
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
lightcyan
|
1852.785
|
1620.770
|
1244.008
|
2232.881
|
2593.454
|
1789.818
|
1639.811
|
1395.580
|
704.237
|
2884.135
|
1949.893
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.611
|
0.325
|
0.952
|
0.184
|
-0.520
|
— |
-0.462
|
0.376
|
— | — | — | — | — |
No JSON data available for plots.