Hg_chrom9_TN10mRNA_17397
Organism: Heterodera glycines Gene Locus: chr9:3990364-3994924 Feature type: polypeptideProtein Sequence
Length: 1,013
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.769 | 1.217 | 0.897 | 0.374 | 1.3 | 0.759 | 0.529 | 1.037 | 1.404 | 1.347 | 1.032 | 1.8 | 1.837 | 0.721 | 1.027 | 1.015 | 0.761 | 0.942 | 1.443 | 1.016 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16436
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
KKRVFQAMIGMILKVERR,RKFKASATAEENEKGKKL,KKKKALMERQMINGKKRVF,RKLETCKERWWHQNERRKD
|
— | — | — | — |
1-18
|
0.985
|
0.833
|
3.000
|
3.000
|
0.056
|
0.047
|
0.199
|
0.154
|
0.248
|
0.579
|
0.270
|
0.042
|
0.795
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012864
|
1.000
|
1.000
|
Hsc_gene_18666.t1
|
Hsc_gene_18666.t1
|
— |
E9NA96.1 Ionotropic receptor 25a [Drosophila melanogaster]
|
KAI1732176.1 ligand-gated ion channel domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005216|GO:0006811|GO:0015276|GO:0016020|GO:0038023
|
GO:0005575_0.938|GO:0110165_0.936|GO:0008150_0.910|GO:0016020_0.901|GO:0071944_0.882|GO:0009987_0.876|GO:0005886_0.874|GO:0003674_0.820|GO:0006810_0.792|GO:0051179_0.792|GO:0051234_0.792|GO:0065007_0.773|GO:0050789_0.759|GO:0050896_0.757|GO:0055085_0.711|GO:0007154_0.694|GO:0023052_0.691|GO:0050794_0.683|GO:0006811_0.677|GO:0034220_0.674|GO:0051716_0.673|GO:0030054_0.657|GO:0005622_0.643|GO:0043226_0.633|GO:0060089_0.628|GO:0038023_0.625|GO:0007165_0.619|GO:0005488_0.608|GO:0045202_0.607|GO:0005215_0.604|GO:0022857_0.604|GO:0065008_0.598|GO:0005216_0.596|GO:0015075_0.596|GO:0015267_0.596|GO:0022803_0.596|GO:0007166_0.589|GO:0022836_0.575|GO:0098590_0.566|GO:0015276_0.564|GO:0022834_0.564|GO:0005230_0.554|GO:0022824_0.554|GO:0022835_0.554|GO:0030594_0.554|GO:0036094_0.535|GO:0043167_0.534|GO:0042391_0.529|GO:0015711_0.526|GO:0043168_0.525|GO:0015849_0.522|GO:0046942_0.522|GO:0004888_0.521|GO:1903825_0.521|GO:1905039_0.521|GO:0006865_0.520|GO:0003333_0.519|GO:0007267_0.517|GO:0007268_0.517|GO:0098916_0.517|GO:0099536_0.517|GO:0099537_0.517|GO:0007215_0.515|GO:0035235_0.515|GO:1990806_0.515|GO:0008514_0.505|GO:0005342_0.503|GO:0046943_0.503
|
IPR001320+502-896_624-929+|IPR001508+540-568_626-651_697-724+|IPR013099+647-722+|IPR015683+129-960+|IPR019594+479-608_514-570+
|
SM00079+502-896+|SM00918+514-570+
|
PF00060+624-929+Ligand-gated_ion_channel|PF07885+647-722+Ion_channel|PF10613+479-608+Ligated_ion_channel_L-glutamate-_and_glycine-binding_site
|
G3DSA:1.10.287.70:FF:000080+615-770+Glutamate_receptor_ionotropic,_kainate|G3DSA:3.40.190.10:FF:000024+475-615+Glutamate_receptor,_ionotropic,_delta_1|G3DSA:3.40.190.10:FF:000160+857-894+GLutamate_Receptor_family_(AMPA)
|
PTHR18966+129-960+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
954-1013
|
1.000
|
1-953
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.575
|
116823.350
|
6.629
|
1.500
|
26.654
|
14.018
|
46.594
|
53.406
|
13.919
|
12.734
|
44.028
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
greenyellow
|
800.554
|
451.479
|
1159.937
|
660.400
|
191.055
|
80.236
|
188.997
|
205.945
|
679.842
|
1890.774
|
1371.803
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.132
|
0.412
|
-0.704
|
-1.822
|
-1.237
|
1.247
|
1.257
|
— | — | — |
-3.188
|
— | — |