Hg_chrom9_TN10mRNA_17398
Organism: Heterodera glycines Gene Locus: chr9:3995146-3996400 Feature type: polypeptideProtein Sequence
Length: 153
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.216 | 0.76 | 1.188 | 0.225 | 1.416 | 0.67 | 0.856 | 0.327 | 1.598 | 0.972 | 1.089 | 1.153 | 1.634 | 0.377 | 0.667 | 1.214 | 0.643 | 1.089 | 1.508 | 1.153 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16437
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— | — | — | — | — | — |
1-19
|
0.994
|
1.000
|
0.000
|
0.000
|
0.391
|
0.235
|
0.060
|
0.603
|
0.421
|
0.324
|
0.213
|
0.004
|
0.341
|
0.225
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012865
|
1.000
|
1.000
|
Hsc_gene_18665.t1
|
Hsc_gene_18665.t1
|
— |
Q9XW16.1 Profilin-1 [Caenorhabditis elegans]
|
AVA09668.1 putative effector protein [Heterodera avenae]
|
No
|
0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003779
|
GO:0008150_0.898|GO:0009987_0.823|GO:0071840_0.717|GO:0016043_0.713|GO:0005575_0.701|GO:0110165_0.696|GO:0006996_0.686|GO:0007010_0.674|GO:0030029_0.674|GO:0030036_0.670|GO:0005622_0.607|GO:0044085_0.558|GO:0022607_0.551|GO:0007015_0.537|GO:0097435_0.537
|
IPR005455+21-153_22-153_23-153+|IPR036140+23-153+|IPR048278+23-153+
|
SM00392+22-153+
|
PF00235+23-153+Profilin
|
— |
PTHR11604+21-153+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-153
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.672
|
16992.230
|
4.481
|
-6.500
|
26.144
|
12.418
|
44.444
|
55.556
|
11.111
|
15.033
|
49.673
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
3612.056
|
1740.608
|
1870.829
|
3418.182
|
5378.845
|
5540.521
|
5789.829
|
5636.727
|
1665.493
|
3537.798
|
2735.381
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.125
|
0.837
|
0.978
|
0.622
|
— | — | — | — | — | — | — | — | — |