Hg_chrom9_TN10mRNA_17402
Organism: Heterodera glycines Gene Locus: chr9:4014715-4017779 Feature type: polypeptideProtein Sequence
Length: 724
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.964 | 0.835 | 0.728 | 0.191 | 0.921 | 1.204 | 0.608 | 0.898 | 1.228 | 1.624 | 1.025 | 1.787 | 1.381 | 1.142 | 1.438 | 1.421 | 0.657 | 0.774 | 1.062 | 0.203 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16441
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.903
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
LGEV,KRQKSKKQSAKKAKKT,KREAPTEADLLFRLRAK,RKRTADGQRERRRGRSA,KRPKSEGQKWTKRQKSKKQ,RRGRSAKTALMENIAKLRR,RKWQMVSKTFSEEQKRHLR
|
1-23
|
0.997
|
— | — | — | — |
0.019
|
— | — |
0.199
|
0.152
|
0.094
|
0.103
|
0.229
|
0.091
|
0.277
|
0.052
|
0.260
|
0.909
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012869
|
1.000
|
1.000
|
Hsc_gene_18659.t2
|
Hsc_gene_18659.t1;Hsc_gene_18659.t2
|
— | — |
KAI1714323.1 CRE-MLTN-13 protein [Ditylenchus destructor]
|
No
|
-0.360
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.953|GO:0005575_0.939|GO:0110165_0.937|GO:0032501_0.800|GO:0032502_0.784|GO:0048856_0.784|GO:0007275_0.757|GO:0009888_0.694|GO:0008544_0.670|GO:0018996_0.670|GO:0040002_0.670|GO:0042303_0.670|GO:0042335_0.670|GO:0042338_0.670|GO:0005576_0.560|GO:0005615_0.556
|
IPR006954+320-462+
|
— |
PF04870+320-462+Moulting_cycle
|
— |
PTHR21523+188-704+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
169-246;709-724
|
2.000
|
1-168;247-708
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.850
|
80939.930
|
10.685
|
37.500
|
25.138
|
8.840
|
47.376
|
52.624
|
15.608
|
9.530
|
46.547
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
86.694
|
50.613
|
123.659
|
60.952
|
38.672
|
35.236
|
496.113
|
18.813
|
61.335
|
24.261
|
40.150
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.055
|
— |
-0.908
|
-0.690
|
— |
3.826
|
— |
4.861
|
— | — | — | — | — |
No JSON data available for plots.