Hg_chrom9_TN10mRNA_17405
Organism: Heterodera glycines Gene Locus: chr9:4031829-4038758 Feature type: polypeptideProtein Sequence
Length: 780
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.073 | 0.894 | 0.653 | 0.663 | 1.282 | 1.151 | 0.9 | 0.769 | 0.855 | 0.641 | 0.699 | 1.508 | 0.783 | 1.06 | 1.204 | 1.648 | 1.723 | 0.855 | 0.394 | 0.566 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16444
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.759
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RRKR,GKGKKK
|
42-66
|
0.995
|
24-47
|
0.999
|
— | — |
0.010
|
— | — |
0.061
|
0.021
|
0.014
|
0.220
|
0.245
|
0.418
|
0.478
|
0.043
|
0.843
|
0.242
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012872
|
1.000
|
1.000
|
Hsc_gene_18655.t1
|
Hsc_gene_18655.t1
|
— |
Q19707.1 Cuticlin-3 [Caenorhabditis elegans]
|
KAI1703608.1 cuticlin-1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.956|GO:0110165_0.953|GO:0071944_0.883|GO:0030312_0.576|GO:0031012_0.550|GO:0062023_0.549|GO:0060102_0.540
|
IPR001507+100-334_100-338+|IPR051962+83-491+
|
SM00241+100-338+
|
— | — |
PTHR22907+83-491+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
335-725
|
2.000
|
1-334;726-780
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.830
|
83671.940
|
6.508
|
0.000
|
23.333
|
6.795
|
53.718
|
46.282
|
12.051
|
11.282
|
59.359
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
340.704
|
323.033
|
66.356
|
342.363
|
396.684
|
961.338
|
522.250
|
187.765
|
28.535
|
419.258
|
251.805
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.518
|
— |
2.480
|
— |
1.294
|
-0.872
|
-2.477
|
1.623
|
— | — | — | — | — |
No JSON data available for plots.