Hg_chrom9_TN10mRNA_17406
Organism: Heterodera glycines Gene Locus: chr9:4038865-4042077 Feature type: polypeptideProtein Sequence
Length: 662
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.054 | 1.475 | 0.687 | 0.26 | 0.655 | 2.363 | 1.151 | 1.208 | 0.604 | 1.061 | 0.526 | 1.688 | 1.259 | 1.075 | 0.986 | 1.23 | 1.312 | 0.71 | 0.581 | 0.267 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16445
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKITNNGTADVMKKMPK
|
— | — |
8-31
|
0.982
|
— | — |
0.000
|
— | — |
0.617
|
0.166
|
0.018
|
0.483
|
0.049
|
0.045
|
0.058
|
0.034
|
0.096
|
0.143
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012873
|
1.000
|
1.000
|
Hsc_gene_18654.t1
|
Hsc_gene_18654.t1
|
— |
Q01085.1 Nucleolysin TIAR [Homo sapiens]
|
KAH7724544.1 Protein TIAR-1 f [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0005575_0.806|GO:0110165_0.795|GO:0003674_0.766|GO:0005488_0.737|GO:0008150_0.689|GO:0005622_0.678|GO:0097159_0.638|GO:0003676_0.625|GO:0016020_0.617|GO:0043226_0.585|GO:0003723_0.567|GO:0043229_0.558|GO:0009987_0.535|GO:0043227_0.508
|
IPR000504+340-418_341-414_342-412_462-540_463-534_464-523+|IPR012677+247-433_434-573+|IPR035979+333-430_456-558+
|
SM00360+341-414_463-534+
|
PF00076+342-412_464-523+RNA_recognition_motif
|
— |
PTHR10352+449-545+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-186;530-662
|
1.000
|
187-529
|
2rne_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.915
|
71160.260
|
8.620
|
12.000
|
18.429
|
8.610
|
50.604
|
49.396
|
10.725
|
7.704
|
56.495
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
orange
|
1264.848
|
3245.717
|
2176.562
|
912.552
|
507.143
|
735.880
|
717.040
|
1392.630
|
1831.222
|
527.473
|
1086.223
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.806
|
-1.968
|
-1.145
|
-0.879
|
0.551
|
— |
0.823
|
-0.817
|
— | — | — | — | — |
No JSON data available for plots.