Hg_chrom9_TN10mRNA_17407
Organism: Heterodera glycines Gene Locus: chr9:4045287-4048806 Feature type: polypeptideProtein Sequence
Length: 574
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.729 | 1.296 | 0.729 | 0.901 | 1.19 | 1.251 | 0.56 | 1.132 | 1.045 | 1.083 | 0.95 | 2.255 | 1.452 | 0.704 | 1.387 | 1.145 | 0.971 | 0.897 | 1.34 | 0.717 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16446
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KKKK
|
4-35
|
0.988
|
56-76
|
0.976
|
— | — |
0.000
|
— | — |
0.113
|
0.065
|
0.026
|
0.213
|
0.375
|
0.198
|
0.289
|
0.005
|
0.839
|
0.133
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012874
|
1.000
|
1.000
|
Hsc_gene_18653.t1
|
Hsc_gene_18653.t1
|
— | — |
KAI1714421.1 amiloride-sensitive sodium channel domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005272|GO:0006814|GO:0016020
|
— |
IPR001873+14-466_18-474+
|
— |
PF00858+14-466+Amiloride-sensitive_sodium_channel
|
— |
PTHR11690+18-474+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
535-574
|
1.000
|
1-534
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.796
|
65894.400
|
8.711
|
17.500
|
26.481
|
11.672
|
50.871
|
49.129
|
15.331
|
11.150
|
46.690
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
1858.848
|
47.679
|
8567.595
|
1005.996
|
159.660
|
214.706
|
100.252
|
10615.595
|
358.188
|
97.011
|
208.944
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7.261
|
4.259
|
-2.983
|
-2.687
|
— |
-1.086
|
5.535
|
-6.587
|
— | — | — | — | — |
No JSON data available for plots.