Hg_chrom9_TN10mRNA_17408
Organism: Heterodera glycines Gene Locus: chr9:4048841-4051494 Feature type: polypeptideProtein Sequence
Length: 679
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.873 | 0.993 | 0.616 | 0.254 | 1.424 | 0.869 | 0.631 | 0.663 | 1.375 | 1.851 | 1.004 | 1.733 | 1.35 | 0.963 | 1.653 | 1.452 | 0.459 | 0.58 | 0.34 | 0.26 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16447
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RKERRKVMREIAKPRPKRD,KKEDEMAKEKSNKLKKNMSKLEEILGKQRAEKGKKEQRKERRKVMREIAKPRPKR
|
39-65
|
0.980
|
— | — | — | — |
0.000
|
— | — |
0.224
|
0.250
|
0.073
|
0.066
|
0.185
|
0.046
|
0.170
|
0.134
|
0.222
|
0.904
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012875
|
1.000
|
1.000
|
Hsc_gene_18652.t1
|
Hsc_gene_18652.t1
|
— | — |
KAI1710851.1 moulting cycle domain-containing protein [Ditylenchus destructor]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR006954+140-453+
|
— |
PF04870+140-453+Moulting_cycle
|
— |
PTHR21523+111-668+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
129-197;436-483
|
3.000
|
1-128;198-435;484-679
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.894
|
76300.470
|
10.221
|
23.500
|
27.982
|
7.511
|
48.601
|
51.399
|
16.053
|
11.929
|
43.004
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
269.128
|
8.152
|
16.482
|
8.916
|
9.725
|
6.887
|
111.495
|
11.070
|
35.465
|
1086.063
|
635.807
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.785
|
— |
-0.774
|
— | — |
4.028
|
— |
3.477
|
-5.022
|
— |
-6.402
|
— | — |
No JSON data available for plots.