Hg_chrom9_TN10mRNA_17410
Organism: Heterodera glycines Gene Locus: chr9:4077133-4084009 Feature type: polypeptideProtein Sequence
Length: 1,367
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.08 | 1.089 | 0.572 | 0.505 | 0.988 | 2.739 | 1.141 | 2.451 | 0.439 | 0.998 | 0.576 | 1.721 | 0.772 | 1.083 | 0.717 | 1.641 | 1.019 | 0.587 | 0.056 | 0.194 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16449
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.905
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PQVKRPK,KKIAKLMSSFSCHKCRRRF
|
— | — | — | — | — | — |
0.000
|
— | — |
0.896
|
0.082
|
0.018
|
0.356
|
0.025
|
0.031
|
0.033
|
0.012
|
0.052
|
0.076
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004946
|
1.000
|
2.000
|
Hsc_gene_18648.t1;Hsc_gene_5799.t1
|
Hsc_gene_18648.t1
|
— | — |
KAI1706142.1 Zinc finger, C2H2 type family protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR013087+341-364_558-581_558-586_560-581_734-757_736-757_977-1000_979-1000_1114-1137_1164-1186_1166-1186+|IPR036236+558-754+
|
SM00355+341-364_558-581_734-757_977-1000_1114-1137_1164-1186+
|
— |
G3DSA:3.30.160.60:FF:002852+714-804+Dorsal_Intercalation_and_Elongation_defect
|
PTHR21190+545-1356+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-291;364-642;683-1367
|
2.000
|
292-363;643-682
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.853
|
145325.840
|
6.746
|
9.500
|
21.287
|
8.413
|
54.353
|
45.647
|
12.217
|
9.071
|
55.377
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
3229.877
|
10339.485
|
2680.995
|
2235.738
|
3410.245
|
6595.098
|
4903.380
|
3261.688
|
963.400
|
873.177
|
911.844
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.177
|
-2.347
|
-0.153
|
0.577
|
0.966
|
-0.418
|
-1.114
|
0.728
|
— | — | — | — | — |
No JSON data available for plots.