SCN Proteipedia

Hg_chrom9_TN10mRNA_17411

Organism: Heterodera glycines Gene Locus: chr9:4084103-4087749 Feature type: polypeptide

Protein Sequence

Length: 757

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.63	1.229	0.673	0.501	1.849	0.915	0.833	0.925	1.027	1.018	1.001	2.797	1.321	0.991	1.429	0.849	0.888	0.46	1.931	0.971	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16450	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	KKLEEEEQKWKKPGEAKEWKKPEKEEEKVKKLGEEEKSHRKKPG	—	—	—	—	—	—	0.000	—	—	0.085	0.085	0.029	0.155	0.161	0.149	0.224	0.029	0.795	0.038

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012877	1.000	1.000	Hsc_gene_18647.t1	—	—	Q09453.2 Glycine receptor subunit beta-type 4 [Caenorhabditis elegans]	KAI1722774.1 neurotransmitter-gated ion-channel ligand binding domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004888\|GO:0005216\|GO:0005230\|GO:0006811\|GO:0016020\|GO:0034220	GO:0008150_0.969\|GO:0009987_0.949\|GO:0005575_0.903\|GO:0110165_0.880\|GO:0065007_0.823\|GO:0016020_0.813\|GO:0050789_0.794\|GO:0051179_0.787\|GO:0006810_0.781\|GO:0051234_0.781\|GO:0005886_0.775\|GO:0071944_0.775\|GO:0003674_0.754\|GO:0007154_0.712\|GO:0023052_0.709\|GO:0050794_0.690\|GO:0030054_0.675\|GO:0006811_0.663\|GO:0055085_0.652\|GO:0034220_0.632\|GO:0007267_0.624\|GO:0045202_0.617\|GO:0050896_0.613\|GO:0051716_0.593\|GO:0032501_0.572\|GO:0099536_0.555\|GO:0099537_0.555\|GO:0005215_0.554\|GO:0005216_0.554\|GO:0015075_0.554\|GO:0015267_0.554\|GO:0022803_0.554\|GO:0022857_0.554\|GO:0098916_0.554\|GO:0007268_0.551\|GO:0007165_0.546\|GO:0098590_0.541\|GO:0065008_0.536\|GO:0022836_0.521	IPR006028+461-481_487-508_521-542_730-750+\|IPR006029+465-571+\|IPR006201+255-590_292-308_324-335_370-384_452-464+\|IPR006202+255-426+\|IPR018000+370-384+\|IPR036719+459-752+\|IPR036734+248-454_255-456+\|IPR038050+455-757+	—	PF02931+255-426+Neurotransmitter-gated_ion-channel_ligand_binding_domain\|PF02932+465-571+Neurotransmitter-gated_ion-channel_transmembrane_region	—	PTHR18945+255-590+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-212;566-721	2.000	213-565;722-757	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.658	87969.840	6.309	-2.000	30.251	12.417	50.462	49.538	15.456	14.795	42.404

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	brown	237.999	314.803	662.750	505.500	141.280	61.886	84.683	364.758	139.212	135.963	137.356

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.843	0.546	-0.281	-1.872	-1.176	0.464	2.456	-1.964	—	—	—	—	—

No JSON data available for plots.

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