SCN Proteipedia

Hg_chrom9_TN10mRNA_17416

Organism: Heterodera glycines Gene Locus: chr9:4116306-4121143 Feature type: polypeptide

Protein Sequence

Length: 1,128

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.691	1.093	1.112	0.367	1.581	1.0	0.781	0.842	0.906	1.162	1.558	1.199	1.207	0.767	1.393	0.912	0.712	0.994	0.955	0.548	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16455	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKNDEGQSQRNKKEEK,KKTVCRNMSRREAKRKRGD,KRQRDKAQTKERWEKHQKELSEIEARRKRKMMATKKTVCRNMSRREAKRKR	42-62	0.996	—	—	—	—	0.000	—	—	0.819	0.062	0.019	0.286	0.054	0.019	0.050	0.010	0.033	0.015

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002273	3.000	1.000	Hsc_gene_18640.t1	Hsc_gene_18640.t1	—	Q14692.1 Ribosome biogenesis protein BMS1 homolog [Homo sapiens]	KAI1720919.1 MOZ/SAS family domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003924\|GO:0005525\|GO:0005634\|GO:0016887\|GO:0042254	GO:0005575_0.941\|GO:0110165_0.934\|GO:0005622_0.881\|GO:0016020_0.868\|GO:0043226_0.849\|GO:0043229_0.818\|GO:0043227_0.772\|GO:0043231_0.731\|GO:0008150_0.702\|GO:0043228_0.667\|GO:0009987_0.663\|GO:0043232_0.663\|GO:0003674_0.655\|GO:0005634_0.652\|GO:0031974_0.605\|GO:0031981_0.605\|GO:0043233_0.605\|GO:0070013_0.605\|GO:0005488_0.603\|GO:0071840_0.539\|GO:0005730_0.531	IPR000795+135-212+\|IPR003593+78-203+\|IPR007034+632-938_662-938+\|IPR012948+228-314_240-313+\|IPR027417+78-212_80-242+\|IPR030387+78-242+\|IPR037875+41-271+\|IPR039761+4-1113+	SM00382+78-203+\|SM00785+228-314+\|SM01362+632-938+	PF00009+135-212+Elongation_factor_Tu_GTP_binding_domain\|PF04950+662-938+40S_ribosome_biogenesis_protein_Tsr1_and_BMS1_C-terminal\|PF08142+240-313+AARP2CN_(NUC121)_domain	G3DSA:3.40.50.300:FF:000105+80-242+BMS1_ribosome_biogenesis_factor	PTHR12858+4-1113+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-51;385-684;1023-1128	2.000	52-384;685-1022	7mq8_SI	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.766	128556.240	9.252	26.500	34.397	9.131	53.723	46.277	18.794	15.603	45.656

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	blue	4080.231	3600.062	3094.957	3129.827	3430.841	2722.801	3229.105	2622.497	3491.160	7046.355	5522.700

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.448	-0.339	0.125	0.101	-0.319	0.258	—	0.444	—	—	—	—	—

No JSON data available for plots.

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