Hg_chrom9_TN10mRNA_17417
Organism: Heterodera glycines Gene Locus: chr9:4121294-4124988 Feature type: polypeptideProtein Sequence
Length: 919
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.784 | 1.189 | 0.772 | 0.488 | 1.578 | 1.144 | 0.44 | 1.088 | 1.209 | 1.22 | 1.368 | 1.408 | 1.149 | 1.172 | 1.288 | 1.119 | 0.696 | 0.907 | 0.335 | 0.512 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16456
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRRR,KREEETLVAKKKKKPKER,KKIKEKKAVAKEKRERER,RRPTMNADDFVYTPLKKVR,KKKPKERSEKPKEVKEKQR,KPATGPNRQRKPTEKKEKEENGDKDRPKKERKIAE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.885
|
0.060
|
0.017
|
0.391
|
0.060
|
0.038
|
0.029
|
0.012
|
0.057
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004947
|
1.000
|
2.000
|
Hsc_gene_18639.t1;Hsc_gene_18639.t2
|
Hsc_gene_18639.t1;Hsc_gene_18639.t2
|
— | — |
KAF7636072.1 Bms1-type G domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.957|GO:0110165_0.957|GO:0005622_0.935|GO:0043226_0.914|GO:0043229_0.894|GO:0043228_0.804|GO:0043232_0.804|GO:0032991_0.753|GO:0005694_0.590|GO:1902494_0.583|GO:0000785_0.571|GO:1990234_0.558|GO:0140535_0.557|GO:0000123_0.545|GO:0031248_0.545|GO:1902493_0.545|GO:0044545_0.540|GO:1902562_0.540
|
IPR026555+170-771+
|
— | — | — |
PTHR13136+170-771+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
87-300;767-919
|
2.000
|
1-86;301-766
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.802
|
104471.730
|
9.149
|
25.000
|
31.230
|
8.487
|
52.884
|
47.116
|
17.519
|
13.711
|
45.375
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1646.403
|
2461.636
|
1656.195
|
1434.620
|
1669.044
|
1470.582
|
2442.100
|
1439.387
|
1665.982
|
1238.441
|
1421.673
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.801
|
-0.916
|
— |
0.187
|
— |
0.742
|
— |
0.905
|
— | — | — | — | — |
No JSON data available for plots.