Hg_chrom9_TN10mRNA_17420
Organism: Heterodera glycines Gene Locus: chr9:4136109-4138876 Feature type: polypeptideProtein Sequence
Length: 739
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.771 | 0.692 | 0.689 | 0.56 | 1.286 | 1.7 | 0.725 | 1.286 | 0.932 | 1.17 | 0.595 | 1.353 | 1.616 | 1.119 | 1.436 | 1.431 | 0.865 | 0.964 | 1.041 | 0.358 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16459
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.980
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
RRTEQPLRFVIQWRRKVRG,RRKAIRQKLPGGIEFGRKSAKGLEVKKRTKKQKRKGREAGK
|
— | — | — | — |
1-25
|
0.801
|
0.880
|
1.000
|
1.000
|
0.256
|
0.033
|
0.041
|
0.291
|
0.222
|
0.393
|
0.289
|
0.063
|
0.771
|
0.146
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004948
|
1.000
|
2.000
|
Hsc_gene_18636.t1;Hsc_gene_18636.t2
|
Hsc_gene_18636.t1;Hsc_gene_18636.t2
|
— | — |
KAK6050448.1 fibronectin type III domain protein [Cooperia oncophora]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
624-739
|
1.000
|
1-623
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.747
|
82982.970
|
7.004
|
5.500
|
25.034
|
10.961
|
49.932
|
50.068
|
13.532
|
11.502
|
48.579
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
brown
|
134.847
|
295.088
|
166.582
|
103.127
|
319.957
|
131.808
|
302.365
|
185.564
|
21.496
|
9.650
|
14.727
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.055
|
-1.654
|
-0.583
|
1.602
|
-1.265
|
1.208
|
0.390
|
0.846
|
— | — |
4.954
|
— | — |