SCN Proteipedia

Hg_chrom9_TN10mRNA_17421

Organism: Heterodera glycines Gene Locus: chr9:4144266-4148925 Feature type: polypeptide

Protein Sequence

Length: 790

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.795	0.971	0.667	0.306	0.992	0.876	0.482	1.013	1.21	1.368	0.652	1.713	1.371	1.412	1.447	1.591	0.726	0.959	1.753	0.782	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16460	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	3-Not_Clustered	0.604

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	KRNLTAGNLLQKRRIS,KRRISSGGGGNSKKWKKP,KKMVPKRNLTAGNLLQKRR,KKDPSANAAAMLDLKLRRR	25-50	0.940	4-94	0.778	—	—	0.004	—	—	0.059	0.048	0.022	0.164	0.273	0.273	0.278	0.013	0.646	0.058

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001461	1.000	4.000	Hsc_gene_18635.t1;Hsc_gene_18635.t2;Hsc_gene_18635.t3;Hsc_gene_18635.t4	Hsc_gene_18635.t2	—	P54244.1 Acetylcholine receptor subunit alpha-type deg-3 [Caenorhabditis elegans]	KAI1704392.1 neurotransmitter-gated ion-channel ligand binding domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004888\|GO:0005216\|GO:0005230\|GO:0006811\|GO:0016020\|GO:0034220	GO:0005575_0.874\|GO:0110165_0.871\|GO:0016020_0.837\|GO:0008150_0.836\|GO:0071944_0.801\|GO:0009987_0.785\|GO:0005886_0.779\|GO:0065007_0.695\|GO:0050789_0.676\|GO:0050794_0.637\|GO:0003674_0.603\|GO:0032501_0.588\|GO:0051179_0.577\|GO:0050896_0.565\|GO:0006810_0.557\|GO:0051234_0.557\|GO:0051716_0.551\|GO:0043226_0.528\|GO:0007154_0.526\|GO:0023052_0.519\|GO:0030054_0.506	IPR006029+283-546+\|IPR006201+70-448_108-124_141-152_193-207_269-281+\|IPR006202+63-275+\|IPR018000+193-207+\|IPR036719+275-767+\|IPR036734+60-279_63-275+\|IPR038050+280-395+	—	PF02931+63-275+Neurotransmitter-gated_ion-channel_ligand_binding_domain\|PF02932+283-546+Neurotransmitter-gated_ion-channel_transmembrane_region	G3DSA:2.70.170.10:FF:000031+58-279+AcetylCholine_Receptor	PTHR18945+70-448+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	417-715;788-790	2.000	1-416;716-787	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.894	89578.950	9.558	22.000	23.038	11.899	46.203	53.797	13.418	9.620	48.861

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	purple	986.669	904.543	1984.931	809.071	972.403	1825.857	1500.423	1205.601	467.022	515.351	494.639

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.904	-0.298	-1.186	0.234	0.921	-0.272	-0.703	0.458	—	—	—	—	—

No JSON data available for plots.

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