Hg_chrom9_TN10mRNA_17425
Organism: Heterodera glycines Gene Locus: chr9:4160073-4165313 Feature type: polypeptideProtein Sequence
Length: 606
(Signal peptide: 1-17)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.614 | 1.19 | 0.84 | 0.512 | 0.853 | 0.804 | 0.53 | 1.65 | 1.43 | 1.405 | 0.85 | 1.359 | 1.604 | 0.889 | 1.111 | 1.367 | 0.92 | 1.125 | 1.015 | 0.874 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16464
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
KKKR,KRHR,KKAEQREKKASPSPRVRRA
|
— | — | — | — |
1-17
|
— |
0.526
|
— |
4.000
|
0.054
|
0.027
|
0.007
|
0.156
|
0.191
|
0.170
|
0.154
|
0.012
|
0.776
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002553
|
3.000
|
1.000
|
Hsc_gene_18631.t1
|
Hsc_gene_18631.t1
|
— |
Q9I8C7.1 Neuronal acetylcholine receptor subunit alpha-10 [Gallus gallus]
|
KAI1706895.1 neurotransmitter-gated ion-channel ligand binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0005216|GO:0005230|GO:0006811|GO:0016020|GO:0022848|GO:0034220|GO:0045211
|
GO:0005575_0.955|GO:0110165_0.953|GO:0016020_0.912|GO:0071944_0.891|GO:0008150_0.885|GO:0005886_0.864|GO:0009987_0.837|GO:0065007_0.770|GO:0051179_0.740|GO:0006810_0.738|GO:0051234_0.738|GO:0050789_0.718|GO:0003674_0.704|GO:0050794_0.671|GO:0055085_0.665|GO:0007154_0.661|GO:0023052_0.652|GO:0030054_0.650|GO:0032501_0.647|GO:0006811_0.632|GO:0050896_0.626|GO:0034220_0.625|GO:0045202_0.608|GO:0051716_0.601|GO:0065008_0.600|GO:0007267_0.596|GO:0098916_0.596|GO:0099536_0.596|GO:0099537_0.596|GO:0007268_0.592|GO:0098590_0.588|GO:0005215_0.562|GO:0022857_0.562|GO:0003008_0.555|GO:0007165_0.548|GO:0005216_0.541|GO:0015075_0.541|GO:0015267_0.541|GO:0022803_0.541|GO:0006812_0.527|GO:0098655_0.527|GO:0060089_0.526|GO:0038023_0.525|GO:0050877_0.520|GO:0042391_0.515|GO:0043226_0.514|GO:0007166_0.504
|
IPR002394+56-72_90-104_108-120_125-143+|IPR006029+235-590+|IPR006201+27-391_69-85_102-113_145-159_220-232+|IPR006202+23-226+|IPR018000+145-159+|IPR036719+226-596+|IPR036734+13-230_23-226+|IPR038050+231-351+
|
— |
PF02931+23-226+Neurotransmitter-gated_ion-channel_ligand_binding_domain|PF02932+235-590+Neurotransmitter-gated_ion-channel_transmembrane_region
|
G3DSA:1.20.58.390:FF:000073+232-353+Neuronal_acetylcholine_receptor_subunit_alpha-9-II|G3DSA:2.70.170.10:FF:000016+14-231+Nicotinic_acetylcholine_receptor_subunit
|
PTHR18945+27-391+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
434-529
|
2.000
|
1-433;530-606
|
6pv8_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.813
|
68838.230
|
8.793
|
18.000
|
24.092
|
13.366
|
47.525
|
52.475
|
14.356
|
9.736
|
48.185
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
181.905
|
487.294
|
418.854
|
130.549
|
88.421
|
70.280
|
64.988
|
213.746
|
47.244
|
207.603
|
138.878
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.449
|
-2.038
|
-1.573
|
-0.593
|
— | — |
1.504
|
-1.577
|
— | — | — | — | — |