Hg_chrom9_TN10mRNA_17426
Organism: Heterodera glycines Gene Locus: chr9:4166033-4168098 Feature type: polypeptideProtein Sequence
Length: 406
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.859 | 1.203 | 0.761 | 0.849 | 1.067 | 1.642 | 0.323 | 1.355 | 0.876 | 1.165 | 0.933 | 1.594 | 1.163 | 1.326 | 1.106 | 1.232 | 1.05 | 1.12 | 0.758 | 0.362 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16465
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.677
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKISLNEYKQRLKMK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.876
|
0.087
|
0.005
|
0.251
|
0.033
|
0.021
|
0.076
|
0.026
|
0.070
|
0.016
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012884
|
1.000
|
1.000
|
Hsc_gene_18630.t1
|
Hsc_gene_18630.t1
|
— |
P34425.1 Cyclin-T1.1 [Caenorhabditis elegans]
|
KAI1710965.1 cyclin-T1.1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006357|GO:0016538
|
GO:0005575_0.834|GO:0008150_0.821|GO:0110165_0.813|GO:0005622_0.712|GO:0016020_0.688|GO:0009987_0.632|GO:0043226_0.609|GO:0043229_0.608|GO:0003674_0.578|GO:0043227_0.578|GO:0065007_0.577|GO:0050789_0.569|GO:0043231_0.564|GO:0050794_0.551|GO:0005488_0.536
|
IPR006671+19-121+|IPR036915+1-123_124-221+|IPR043198+2-338+
|
— |
PF00134+19-121+Cyclin,_N-terminal_domain|PF21797+140-215+Cyclin-T2-like,_C-terminal_domain
|
— |
PTHR10026+2-338+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
240-406
|
1.000
|
1-239
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.787
|
45646.150
|
8.187
|
9.500
|
24.877
|
9.113
|
51.478
|
48.522
|
14.286
|
10.591
|
51.232
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
orange
|
1760.380
|
3594.032
|
1807.452
|
1092.773
|
988.556
|
866.857
|
1333.211
|
1307.846
|
3044.162
|
1297.021
|
2045.795
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.222
|
-1.855
|
-0.617
|
-0.176
|
-0.174
|
0.632
|
0.489
|
— | — |
-1.306
|
— | — | — |
No JSON data available for plots.